10.4231/D3DR2P83H
Daisuke Kihara, H. Huang, Y.H. Tan
03/08/2013
Aligning distantly related protein sequences is a long-standing problem in bioinformatics, and a key for successful protein structure prediction. Its importance is increasing recently in the context of structural genomics projects because more and more exp...
Amino Acids/chemistry Biochemistry Bioinformatics Molecular Biosciences Protein Folding
10.4231/D37659F6Q
03/08/2013
In recent years, various families of small non-coding RNAs (sRNAs) have been discovered by experimental and computational approaches, both in bacterial and eukaryotic genomes. Although most of them await elucidation of their function, it has been reported...
Bacterial Bacterial/Genetics Biochemistry Bioinformatics Deinococcus/Genetics Escherichiacoli/Metabolism Molecular Biosciences Multigene Family RNA
10.4231/D3BZ61792
Bin Li, Daisuke Kihara, Manish Agrawal, Srinivasan Turuvekere
03/08/2013
Experimentally determined protein tertiary structures are rapidly accumulating in a database, partly due to the structural genomics projects. Included are proteins of unknown function, whose function has not been investigated by experiments and was not abl...
Argininosuccinate Synthase Binding Sites Biochemistry Bioinformatics Computer Simulation Molecular Biosciences Protein Structure Sensitivity and Specificity Tertiary Tetrahydrofolate Dehydrogenase/chemistry
10.4231/D33F4KN2K
Bin Li, Daisuke Kihara, Jianjun Hu
03/08/2013
Computational methods for de novo identification of gene regulation elements, such as transcription factor binding sites, have proved to be useful for deciphering genetic regulatory networks. However, despite the availability of a large number of algorithm...
Algorithms Base Sequence Binding Sites Biochemistry Bioinformatics Computational Biology / Methods DNA/Chemistry DNA/methods Escherichia coli/Genetics Factors/Metabolism Markov Chains Markov Chains Regulatory Sequences Molecular Biosciences Regulon Sequence Alignment Sequence Analysis
10.4231/D3WW7702P
Michael Fosmire, Monica E. Cardella, Ruth Wertz, Senay Purzer
03/07/2013
The Information Seeking, Evaluation, Application, and Documentation (InfoSEAD) protocol was developed to assess four areas of student information skills. '''Seeking:''' measuring the quantity and variety of information sources used...
10.4231/D3ZC7RT9G
Daiquan Chen, Jessica Griffin, Laura J. Pyrak-Nolte, Nicholas Giordano
09/19/2013
We investigate experimentally the functional relationship between capillary pressure, Pc, wetting phase saturation, Sw, and interfacial area per volume between the wetting and nonwetting phases, awn, for drainage and imbibition processes in micromodels of...
10.4231/R7N58J9Z
Baichuan Zhang, Bartlomiej P. Rajwa, Murat Dundar, Qiang Kou, Yicheng He
10/01/2015
We study a biodetection application as a case study to demonstrate that K-means-based unsupervised feature learning can be a simple yet effective alternative to deep learning techniques for small data sets with limited intra- as well as inter-class diversi...
bacterial colonies BARDOT Biomedical Engineering Computer Science deep learning Elastic light scattering Interdisciplinary Research K-Means Clustering Life Sciences Machine Learning representation learning
10.4231/D3PV6B70H
Daiquan Chen, David Nolte, Laura J. Pyrak-Nolte, Nicholas Giordano
09/19/2013
Experiments were performed on transparent two-dimensional microfluidic porous systems to investigate the relationships among capillary pressure and the interfacial areas per volume between two fluid phases and one solid phase. Capillary pressures were calc...
10.4231/D3P26Q35R
Michael Fosmire, Ruth Wertz, Senay Purzer
04/08/2013
The CELT download includes the blueprint for writing assessment items, and the content of the assessment itself. This version (4.1) has 2 parts, one on an engineering topic, and one on a biology topic. The correct responses are not indicated in this versio...
Assessment Education Engineering Education Environmental Engineering
10.4231/D3X63B541
10/17/2013
Guidelines for conducting heat straightening repair have been developed by FHWA and many DOTS. The guidelines establish limits for: (a) the maximum damage that can be repaired, (b) the maximum restraining force, and %(c%) the maximum heating temperature to...
Civil Engineering Damaged Steel Beam Bridge Heat straightening repair Joint Transportation Research Program JTRP Multiple heat straightening Overheating Overstraining SPR-3105
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