PURR Registry

Position of MLL1 morphemes in human genomic DNA

10.4231/R7H41PBT

Daidong Wang, Elise Novorolsky, Minou Bina, 0000-0001-6833-8698, Noorfatin J. Zulkefl, Phillip J. Wyss

03/04/2014

Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013).

Binding Sites Bioinformatics Cell division Chemistry Chromatin structure Cis-elements Codes in DNA CpG islands Gene bookmarking Gene Regulation Mammalian genomes Mitosis MLL MLL binding sites Mouse genome Regulatory codes TREs Trithorax response elements

Localization of MLL1 morphemes in mouse mm9 genomic DNA

10.4231/R7KW5CXF

Daidong Wang, Minou Bina, 0000-0001-6833-8698, Phillip J. Wyss, Xiaohui C. Song

04/01/2014

Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013)

Binding Sites Cell division Chemistry Chromatin structure Cis-elements Codes in DNA CpG islands Gene bookmarking Gene Regulation Mammalian genomes Mitosis MLL MLL binding sites Mouse genome Regulatory codes TREs Trithorax response elements

Density of ZFBS-Morph overlaps in the build hg19 of the human genome

10.4231/PR3C-J556

Minou Bina, 0000-0001-6833-8698, Phillip J. Wyss, Xiaohui Carol Song

05/30/2019

Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.

Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Germline DMRs Human Genome ICRs MLL ZFP57

Localization of potential regulatory signals in the human genome

10.4231/R7V40S43

Minou Bina, 0000-0001-6833-8698, Phillip J. Wyss

08/13/2014

Discovering sequences with potential regulatory characteristics

Bioinformatics Chemistry Codes in Human DNA Gene Regulation Genetic Vocabulary Genomics Human Genome Regulatory Signals Sequence Context Transcription factor binding sites

Mimicking the First Turn of an Alpha-Helix with an Unnatural Backbone: Conformation-Specific IR and UV Spectroscopy of Cyclically Constrained Beta/Gamma-Peptides (Dataset)

10.4231/R7B56GN2

Brian Fisher, Joseph R. Gord, Patrick S. Walsh, Samuel Gellman, Timothy S. Zwier, 0000-0002-4468-5748

10/07/2014

Contained within are the text files for all experimental spectra presented in the paper as well as the Gaussian09 output files for assigned structures.

Chemistry Conformation Specific Spectroscopy Double Resonance Spectroscopy Foldamers Peptides Secondary Structure

Potential Transcription Factor Binding Sites in the Human Genome (hg19)

10.4231/R7JM27JN

Minou Bina, 0000-0001-6833-8698, Phillip J. Wyss

10/08/2014

Supplementary material for the article entitled “Discovering sequences with potential regulatory characteristics”. Bina M., Wyss P., et al. Genomics 93:314-22 (2009).

Binding Sites Chemistry Gene Regulation Human Genome TFBSs Transcription Transcription factor binding sites Transcription Factors

Gas-Phase Folding of a Prototypical Protonated Pentapeptide: Spectroscopic Evidence for Formation of a Charge-stabilized Beta-Hairpin (Structures)

10.4231/R7XG9P3W

Andrew F. DeBlase, James G. Redwine, John R. Hopkins, Nicole Lyn Burke, Scott A. McLuckey, Timothy S. Zwier, 0000-0002-4468-5748

02/17/2016

Contains .log files for structures accompanying the paper titled: "Gas-Phase Folding of a Prototypical Protonated Pentapeptide: Spectroscopic Evidence for Formation of a Charge-stabilized β-Hairpin"

Beta-Hairpin Beta-turn Chemistry Ion Spectroscopy Leucine enkephalin Mass Spectrometry Spectroscopy

Occurrences of MLL1 morphemes in human cDNAs retrieved from GenBank

10.4231/R71834DW

Minou Bina, 0000-0001-6833-8698, Phillip J. Wyss

04/24/2015

Supplementary material for the publication entitled “Impact of the MLL1 Morphemes on Codon Utilization and Preservation in CpG Islands.” Bina, M, Wyss P. Biopolymers in press.

Biochemistry Bioinformatics Chemistry Coding sequences Codon bias Codon selection Codon utilization CpG islands Exon Exons Genomics Human Genome MLL1 morphemes in CDSs MLL1 morphemes in exons Morphemes MLL1 Overlapping codes Regulatory codes in DNA Trithorax response elements