Genomic imprinting results in the expression of a subset of genes from either the maternal or paternal allele. This process is regulated by Imprinting Control Regions (ICRs), dispersed along the mammalian autosomal chromosomes. The ICRs often encompass a...
Supplementary materials for the publication entitled: "Discovering sequences with potential regulatory characteristics." Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Access dataset in genome browser. In the huma...
The human genome may include overlapping codes to accommodate a wide-range of selective pressures imposed by various cellular requirements. In this context, we have examined whether occurrences of MLL1 morphemes in exons of human genes may impose constrai...
Biochemistry Bioinformatics Chemistry Coding sequences Codon bias Codon selection Codon utilization CpG islands Exon Exons Genomics Human Genome MLL1 morphemes in CDSs MLL1 morphemes in exons Morphemes MLL1 Overlapping codes Regulatory codes in DNA Trithorax response elements
This dataset contains files required for imputation of rice genomes using IMPUTE-2 software. These files were originally packaged within the Rice Imputation Server, a web-based platform developed by Wang et al. (2018). The Rice Imputation Server has since...
Adane Gebreyohannes, Alemnesh Bekele, Alemu Tirfessa, Amare Nega, Amare Seyoum, Chemeda Birhanu, Dagnachew Lule, Gebisa Ejeta, Getachew Ayana, Gezahegn Tessema, Habte Nida, Kebede Dessalegn, Moges Mekonen, Tamirat Bejiga, Tesfaye Mengiste, Tesfaye Tesso
Phenotypic data collected from field trials, genotypic data generated through genotyping by sequencing, coupled with agro-climatic data of sorghum accessions from Ethiopia were used to conduct comprehensive germplasm characterizations. The datasets were al...
In placental mammals, a group of genes is imprinted to impart parent-of-origin-specific expression. The human chromosomal band 11p15.5 encompasses an imprinted domain (H19 - IGF2) regulated by an Imprinting Control Region (ICR) at about 2 kb upstream of t...
Adane Gebreyohannes, Adedayo Adeyanju, Alemnesh Bekele, Alemu Tirfessa, Amare Nega, Amare Seyoum, Dagnachew Lule, Firew Mekbib, Gebisa Ejeta, Getachew Ayana, Gezahegn Tessema, Habte Nida, Kebede Desalegn, Ketema Belete, Moges Mekonen, Taye Taddese, Tesfaye Mengiste, Tesfaye Tesso
Genome-wide association analysis was conducted on a large Ethiopian sorghum landrace collection with considerable genetic diversity that have evolved under the equally diverse environmental conditions in the region. Several new loci and candidate genes und...
Proteins that bind CpG containing sequences play central roles in numerous biological processes including the regulation of transcription and genomic imprinting. Among these proteins, MLL1 and MLL2 bind a set of nonmethylation CpG-rich motifs, known as th...
Sorghum is an important food crop for millions of people in Africa and Asia. Whole genome re-sequencing of sorghum EMS mutants exhibiting an alkali spreading value (ASV) phenotype revealed candidate SNPs in Sobic.004G163700 and Sobic.010G093400. Comparativ...
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