Datasets

subject: Genomics type: dataset

Total is 9 Results
Density of ZFBS-Morph overlaps in the build hg19 of the human genome

10.4231/PR3C-J556

Minou Bina, Phillip J. Wyss, Xiaohui Carol Song

05/30/2019

Genomic imprinting results in the expression of a subset of genes from either the maternal or paternal allele.  This process is regulated by Imprinting Control Regions (ICRs), dispersed along the mammalian autosomal chromosomes.  The ICRs often encompass a...

Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Germline DMRs Human Genome ICRs MLL ZFP57

Localization of potential regulatory signals in the human genome

10.4231/R7V40S43

Minou Bina, Phillip J. Wyss

08/13/2014

Supplementary materials for the publication entitled: "Discovering sequences with potential regulatory characteristics." Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Access dataset in genome browser. In the huma...

Bioinformatics Chemistry Codes in Human DNA Gene Regulation Genetic Vocabulary Genomics Human Genome Regulatory Signals Sequence Context Transcription factor binding sites

Occurrences of MLL1 morphemes in human cDNAs retrieved from GenBank

10.4231/R71834DW

Minou Bina, Phillip J. Wyss

04/24/2015

The human genome may include overlapping codes to accommodate a wide-range of selective pressures imposed by various cellular requirements.  In this context, we have examined whether occurrences of MLL1 morphemes in exons of human genes may impose constrai...

Biochemistry Bioinformatics Chemistry Coding sequences Codon bias Codon selection Codon utilization CpG islands Exon Exons Genomics Human Genome MLL1 morphemes in CDSs MLL1 morphemes in exons Morphemes MLL1 Overlapping codes Regulatory codes in DNA Trithorax response elements

Positions of predicted CTCF binding sites and unique A and B-repeats in the build hg19 of the Human Genome

10.4231/R74B2ZHD

Minou Bina

01/25/2018

In placental mammals, a group of genes is imprinted to impart parent-of-origin-specific expression.  The human chromosomal band 11p15.5 encompasses an imprinted domain (H19 - IGF2) regulated by an Imprinting Control Region (ICR) at about 2 kb upstream of t...

Binding Sites Chemistry Chromatin Boundaries Cohesin CTCF Gene Regulation Genomic imprinting Genomics H19 Human Genome IGF2 RAD21 SMC3

Ethiopian sorghum landrace SNP and phenotype data

10.4231/PYQV-AT79

Adane Gebreyohannes, Adedayo Adeyanju, Alemnesh Bekele, Alemu Tirfessa, Amare Nega, Amare Seyoum, Dagnachew Lule, Firew Mekbib, Gebisa Ejeta, Getachew Ayana, Gezahegn Tessema, Habte Nida, Kebede Desalegn, Ketema Belete, Moges Mekonen, Taye Taddese, Tesfaye Mengiste, Tesfaye Tesso

05/03/2019

Genome-wide association analysis was conducted on a large Ethiopian sorghum landrace collection with considerable genetic diversity that have evolved under the equally diverse environmental conditions in the region. Several new loci and candidate genes und...

Botany Ethiopia Genomics Germplasm Landrace Phenotyping Plant Pathology SNP Sorghum

The positions of ZFBS and ZFBS-Morph overlaps in the build hg19 of the human genome

10.4231/SK8Y-EA21

Minou Bina, Phillip J. Wyss, Xiaohui Carol Song

05/30/2019

Proteins that bind CpG containing sequences play central roles in numerous biological processes including the regulation of transcription and genomic imprinting.  Among these proteins, MLL1 and MLL2 bind a set of nonmethylation CpG-rich motifs, known as th...

Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Human Genome MLL ZFP57

SNP datasets and passport information of sorghum accessions from Ethiopia

10.4231/EZDX-XT41

Adane Gebreyohannes, Alemnesh Bekele, Alemu Tirfessa, Amare Nega, Amare Seyoum, Chemeda Birhanu, Dagnachew Lule, Gebisa Ejeta, Getachew Ayana, Gezahegn Tessema, Habte Nida, Kebede Dessalegn, Moges Mekonen, Tamirat Bejiga, Tesfaye Mengiste, Tesfaye Tesso

08/03/2020

Phenotypic data collected from field trials, genotypic data generated through genotyping by sequencing, coupled with agro-climatic data of sorghum accessions from Ethiopia were used to conduct comprehensive germplasm characterizations. The datasets were al...

Botany Ethiopia Genomics Germplasm Landrace Phenotyping Plant Pathology Sorghum

Rice imputation files: reference panel and recombination map

10.4231/1CKS-S381

Diane Ran Wang, Dmytro Chebotarov, Francisco Agosto-Perez, Jonathan Marchini, Kenneth McNally, Melissa Fitzgerald, Nickolai Alexandrov, Susan McCouch, Yuxin Shi

08/19/2021

This dataset contains files required for imputation of rice genomes using IMPUTE-2 software. These files were originally packaged within the Rice Imputation Server, a web-based platform developed by Wang et al. (2018). The Rice Imputation Server has since...

Agronomy Genetic Diversity Genomics imputation reference panel Rice

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