Subject
Creator
- Bin Li 2
- Meghana Chitale 2
- Catherine Rayon 1
- David Yifeng 1
- H. Huang 1
- Ishita K. Khan 1
- Jianjun Hu 1
- Manish Agrawal 1
- Srinivasan Turuvekere 1
Type
- Dataset 7
Date
- 2013 7
subject: Bioinformatics creator: Daisuke Kihara, 0000-0003-4091-6614
Total is 7 Results
Evaluation of Function Predictions for Moonlighting Proteins
10.4231/D3T727G0X
Catherine Rayon
,
Daisuke Kihara
,
Ishita K. Khan
,
Meghana Chitale
02/14/2013
Supplemental datasets used for evaluation of function predictions for moonlighting proteins.
Biochemistry Bioinformatics Molecular Biosciences proteomics
Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP
10.4231/D3Z02Z836
Daisuke Kihara
,
Meghana Chitale
,
Troy Hawkins
02/14/2013
Supplementary Material for the Paper: Functional similarity network with high confidence protein function prediction by PFP. BMC Bioinformatics. 2010 May 19;11:265. doi: 10.1186/1471-2105-11-265.
Biochemistry Bioinformatics Computational Biology / Methods Genetic Molecular Biosciences Proteins / Metabolism
Threading Without Optimizing Weighting Factor for the Scoring Function Proteins
10.4231/D3PK0719W
02/14/2013
Supplementary Material for the Paper: Threading Without Optimizing Weighting Factor for the Scoring Function Proteins, in revision (2008). Proteins. 2008 Nov 15;73(3):581-96. doi: 10.1002/prot.22082.
Algorithms Biochemistry Bioinformatics databases Molecular Biosciences Protein Proteins / chemistry
Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences
10.4231/D3DR2P83H
Daisuke Kihara
,
H. Huang
,
Y.H. Tan
03/08/2013
Supplementary materials for the paper: Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences. Proteins: Structure, Function and Bioinformatics 64: 587-600. (2006)
Amino Acids/chemistry Biochemistry Bioinformatics Molecular Biosciences Protein Folding
Comparative genomics of small RNAs in bacterial genomes
10.4231/D37659F6Q
03/08/2013
Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.
Bacterial Bacterial/Genetics Biochemistry Bioinformatics Deinococcus/Genetics Escherichiacoli/Metabolism Molecular Biosciences Multigene Family RNA
Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria
10.4231/D3BZ61792
Bin Li
,
Daisuke Kihara
,
Manish Agrawal
,
Srinivasan Turuvekere
03/08/2013
Supplementary material for the paper: Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria. Proteins. 2008 May 1;71(2):670-83.
Argininosuccinate Synthase Binding Sites Biochemistry Bioinformatics Computer Simulation Molecular Biosciences Protein Structure Sensitivity and Specificity Tertiary Tetrahydrofolate Dehydrogenase/chemistry
Limitations and Potentials of Current Motif Discovery Algorithms
10.4231/D33F4KN2K
Bin Li
,
Daisuke Kihara
,
Jianjun Hu
03/08/2013
Supplementary material for the papers: Limitations and Potentials of Current Motif Discovery Algorithms, Nucleic Acids Res. 2005; 33(15): 4899–4913
Algorithms Base Sequence Binding Sites Biochemistry Bioinformatics Computational Biology / Methods DNA/Chemistry DNA/methods Escherichia coli/Genetics Factors/Metabolism Markov Chains Markov Chains Regulatory Sequences Molecular Biosciences Regulon Sequence Alignment Sequence Analysis
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