Datasets

Subject
Creator
Type
Date

subject: Biochemistry

Total is 48 Results
Comparative genomics of small RNAs in bacterial genomes

10.4231/D37659F6Q

Daisuke Kihara ORCID logo , Stan Luban

03/08/2013

Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.

Bacterial Bacterial/Genetics Biochemistry Bioinformatics Deinococcus/Genetics Escherichiacoli/Metabolism Molecular Biosciences Multigene Family RNA

Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria

10.4231/D3BZ61792

Bin Li , Daisuke Kihara ORCID logo , Manish Agrawal , Srinivasan Turuvekere

03/08/2013

Supplementary material for the paper: Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria. Proteins. 2008 May 1;71(2):670-83.

Argininosuccinate Synthase Binding Sites Biochemistry Bioinformatics Computer Simulation Molecular Biosciences Protein Structure Sensitivity and Specificity Tertiary Tetrahydrofolate Dehydrogenase/chemistry

Limitations and Potentials of Current Motif Discovery Algorithms

10.4231/D33F4KN2K

Bin Li , Daisuke Kihara ORCID logo , Jianjun Hu

03/08/2013

Supplementary material for the papers: Limitations and Potentials of Current Motif Discovery Algorithms, Nucleic Acids Res. 2005; 33(15): 4899–4913

Algorithms Base Sequence Binding Sites Biochemistry Bioinformatics Computational Biology / Methods DNA/Chemistry DNA/methods Escherichia coli/Genetics Factors/Metabolism Markov Chains Markov Chains Regulatory Sequences Molecular Biosciences Regulon Sequence Alignment Sequence Analysis

Metabolic Source Isotopic Pair Labeling and Genome-Wide Association Are Complementary Tools for the Identification of Metabolite-Gene Associations in Plants

10.4231/1702-6M85

Brian Dilkes ORCID logo , Clint C S Chapple ORCID logo , Cole Wunderlich ORCID logo , Jeffrey Simpson ORCID logo , Xu Li

03/08/2021

Development of PODIUM: A tool to identify and extract from untargeted LC-MS data MS features that incorporated 13C-fed isotopic labels.

Biochemistry liquid chromatography–mass spectrometry (LC–MS) metabolomics Plant Metabolism stable isotope labeling untargeted metabolomics analyses

Predicted regulatory signals in the human HOXA locus: supplemental material for the report: Discovering sequences with potential regulatory characteristics

10.4231/D3DZ03214

Gregory E. Crawford , Minou Bina ORCID logo , Phillip J. Wyss , Sang P. Park , Sheryl A. Lazarus , Syed A. Shah , Wenhui Ren , Wojciech Szpankowski , Xiaohui C. Song

12/17/2013

Supplementary materials for the paper: Discovering sequences with potential regulatory characteristics. Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Genomics. 2009 Apr;93(4):314-22

Binding-site Biochemistry Bioinformatics Codes in Human DNA DNASE-I hypersensitive sites Gene Regulation Genetic Vocabulary Human Genome Hypersensitive Sites Molecular Biosciences Promoter Regions Regulatory Signals Sequence Context Transcription factor binding sites Transcription Factors

Figure X: Insolubility of AarCH6-C357Y

10.4231/D31834278

Elwood A. Mullins , T. Joseph Kappock

10/22/2013

Supplementary to Mullins E.A. and Kappock T.J. (2013) "Functional analysis of the acetic acid resistance (aar) gene cluster in Acetobacter aceti strain 1023." Acetic Acid Bacteria 2: e3. (DOI: 10.4081/aab.2013.s1.e3).

Acidophile Biochemistry Chemistry citric acid cycle enzyme Molecular Biosciences

Figures from Functional analysis of the acetic acid resistance (aar) gene cluster in Acetobacter aceti strain 1023

10.4231/D3WH2DF2W

Elwood A. Mullins , T. Joseph Kappock

10/22/2013

Supplementary to Mullins E.A. and Kappock T.J. (2013) "Functional analysis of the acetic acid resistance (aar) gene cluster in Acetobacter aceti strain 1023." Acetic Acid Bacteria 2: e3. (DOI: 10.4081/aab.2013.s1.e3).

Acidophile Biochemistry Chemistry citric acid cycle enzyme Molecular Biosciences

Occurrences of MLL1 morphemes in human cDNAs retrieved from GenBank

10.4231/R71834DW

Minou Bina ORCID logo , Phillip J. Wyss

04/24/2015

Supplementary material for the publication entitled “Impact of the MLL1 Morphemes on Codon Utilization and Preservation in CpG Islands.” Bina, M, Wyss P. Biopolymers in press.

Biochemistry Bioinformatics Chemistry Coding sequences Codon bias Codon selection Codon utilization CpG islands Exon Exons Genomics Human Genome MLL1 morphemes in CDSs MLL1 morphemes in exons Morphemes MLL1 Overlapping codes Regulatory codes in DNA Trithorax response elements

Supporting data for Ma and Weake 2014 JoVE publication

10.4231/R7TD9V91

Jingqun Ma , Vikki Marie Weake ORCID logo

02/06/2017

Supporting and raw data for Figures 1, 2, 3 and Table 1 from: Ma, J. and Weake, V.M. (2014). Affinity-based isolation of tagged nuclei from Drosophila tissues for gene expression analysis. Journal of Visualized Experiments 85. PMID:24686501.

Biochemistry cell-type specific Drosophila Gene Expression nuclei affinity purification nuclei isolation

Genetic engineering of Arabidopsis to overproduce disinapoyl esters, potential lignin modification molecules

10.4231/R77H1GJB

Clint C S Chapple ORCID logo , Huaping Mo , Jeong Kim , Shinyoung Lee

02/02/2017

BBIO-D-16-00198R1 Genetic engineering of Arabidopsis to overproduce disinapoyl esters, potential lignin modification molecules Shinyoung Lee; Huaping Mo; Jeong Im Kim; Clint Chapple. Biotechnology for Biofuels

Arabidopsis Biochemistry Biotechnology

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