Datasets

Subject
Creator
Type
Date

subject: Biochemistry type: dataset

Total is 46 Results
Occurrences of MLL1 morphemes in human cDNAs retrieved from GenBank

10.4231/R71834DW

Minou Bina ORCID logo , Phillip J. Wyss

04/24/2015

Supplementary material for the publication entitled “Impact of the MLL1 Morphemes on Codon Utilization and Preservation in CpG Islands.” Bina, M, Wyss P. Biopolymers in press.

Biochemistry Bioinformatics Chemistry Coding sequences Codon bias Codon selection Codon utilization CpG islands Exon Exons Genomics Human Genome MLL1 morphemes in CDSs MLL1 morphemes in exons Morphemes MLL1 Overlapping codes Regulatory codes in DNA Trithorax response elements

Supporting data for Ma and Weake 2014 JoVE publication

10.4231/R7TD9V91

Jingqun Ma , Vikki Marie Weake ORCID logo

02/06/2017

Supporting and raw data for Figures 1, 2, 3 and Table 1 from: Ma, J. and Weake, V.M. (2014). Affinity-based isolation of tagged nuclei from Drosophila tissues for gene expression analysis. Journal of Visualized Experiments 85. PMID:24686501.

Biochemistry cell-type specific Drosophila Gene Expression nuclei affinity purification nuclei isolation

Genetic engineering of Arabidopsis to overproduce disinapoyl esters, potential lignin modification molecules

10.4231/R77H1GJB

Clint C S Chapple ORCID logo , Huaping Mo , Jeong Kim , Shinyoung Lee

02/02/2017

BBIO-D-16-00198R1 Genetic engineering of Arabidopsis to overproduce disinapoyl esters, potential lignin modification molecules Shinyoung Lee; Huaping Mo; Jeong Im Kim; Clint Chapple. Biotechnology for Biofuels

Arabidopsis Biochemistry Biotechnology

Supporting data for Ma et al. 2016 G3 publication

10.4231/R7PG1PQR

Jingqun Ma , Pete E Pascuzzi , Vikki Marie Weake ORCID logo

02/20/2017

Supporting and raw data for Figures 1 - 5 and Figure S1 from: Ma et al. (2016) Transcriptome Profiling Identifies Multiplexin as a target of SAGA Deubiquitinase Activity in Glia.... G3 (Bethesda). PMID: 27261002.

axon guidance Biochemistry Drosophila glia Neuroscience nonstop RNA_seq SAGA sgf11 Transcriptome

Evaluation of Function Predictions for Moonlighting Proteins

10.4231/D3T727G0X

Catherine Rayon , Daisuke Kihara ORCID logo , Ishita K. Khan , Meghana Chitale

02/14/2013

Supplemental datasets used for evaluation of function predictions for moonlighting proteins.

Biochemistry Bioinformatics Molecular Biosciences proteomics

Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP

10.4231/D3Z02Z836

Daisuke Kihara ORCID logo , Meghana Chitale , Troy Hawkins

02/14/2013

Supplementary Material for the Paper: Functional similarity network with high confidence protein function prediction by PFP. BMC Bioinformatics. 2010 May 19;11:265. doi: 10.1186/1471-2105-11-265.

Biochemistry Bioinformatics Computational Biology / Methods Genetic Molecular Biosciences Proteins / Metabolism

Threading Without Optimizing Weighting Factor for the Scoring Function Proteins

10.4231/D3PK0719W

Daisuke Kihara ORCID logo , David Yifeng

02/14/2013

Supplementary Material for the Paper: Threading Without Optimizing Weighting Factor for the Scoring Function Proteins, in revision (2008). Proteins. 2008 Nov 15;73(3):581-96. doi: 10.1002/prot.22082.

Algorithms Biochemistry Bioinformatics databases Molecular Biosciences Protein Proteins / chemistry

Characterizing a gene expression toolkit for eye- and photoreceptor-specific expression in Drosophila - Supporting data for Escobedo et al. (2021)

10.4231/6AF9-3085

Spencer Escobedo , Vikki Marie Weake ORCID logo

02/23/2021

Supporting and raw data for Escobedo et al. (2021) including microscopy images.

Biochemistry Drosophila Eye Gal4 Photoreceptor

Regulation of Phaeodactylum plastid gene transcription

10.4231/ME5R-C919

Gilbert Kayanja , Iskander Ibrahim , Sujith Puthiyaveetil ORCID logo

05/19/2021

This dataset contains raw data used for plotting the figures associated with the following publication https://link.springer.com/article/10.1007/s11120-020-00811-1

Biochemistry Gene Regulation light harvesting photosynthesis

The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability - Supporting data for Torres-Zelada et al. (2018)

10.4231/R72V2DD0

Aktan Alpsoy , Benjamin D. Anderson , Eliana F. Torres-Zelada , Emily C. Dykhuizen , Laurence Florens , Michael P. Washburn , Robert E. Stephenson , Selene K. Swanson , Vikki Weake ORCID logo

12/11/2018

Supporting data and protocols for for Torres-Zelada et al. (2018). The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability. Journal of Cell Science.

Biochemistry Chiffon Dbf4 Drosophila Gcn5 Gene Expression Histone Acetylation Replication

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