Datasets

subject: Bioinformatics

Total is 14 Results
Evaluation of Function Predictions for Moonlighting Proteins

10.4231/D3T727G0X

Catherine Rayon , Daisuke Kihara ORCID logo , Ishita K. Khan , Meghana Chitale

02/14/2013

Supplemental datasets used for evaluation of function predictions for moonlighting proteins.

Biochemistry Bioinformatics Molecular Biosciences proteomics

Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP

10.4231/D3Z02Z836

Daisuke Kihara ORCID logo , Meghana Chitale , Troy Hawkins

02/14/2013

Supplementary Material for the Paper: Functional similarity network with high confidence protein function prediction by PFP. BMC Bioinformatics. 2010 May 19;11:265. doi: 10.1186/1471-2105-11-265.

Biochemistry Bioinformatics Computational Biology / Methods Genetic Molecular Biosciences Proteins / Metabolism

Threading Without Optimizing Weighting Factor for the Scoring Function Proteins

10.4231/D3PK0719W

Daisuke Kihara ORCID logo , David Yifeng

02/14/2013

Supplementary Material for the Paper: Threading Without Optimizing Weighting Factor for the Scoring Function Proteins, in revision (2008). Proteins. 2008 Nov 15;73(3):581-96. doi: 10.1002/prot.22082.

Algorithms Biochemistry Bioinformatics databases Molecular Biosciences Protein Proteins / chemistry

Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences

10.4231/D3DR2P83H

Daisuke Kihara ORCID logo , H. Huang , Y.H. Tan

03/08/2013

Supplementary materials for the paper: Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences. Proteins: Structure, Function and Bioinformatics 64: 587-600. (2006)

Amino Acids/chemistry Biochemistry Bioinformatics Molecular Biosciences Protein Folding

Comparative genomics of small RNAs in bacterial genomes

10.4231/D37659F6Q

Daisuke Kihara ORCID logo , Stan Luban

03/08/2013

Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.

Bacterial Bacterial/Genetics Biochemistry Bioinformatics Deinococcus/Genetics Escherichiacoli/Metabolism Molecular Biosciences Multigene Family RNA

Separating Fractal and Oscillatory Components in the Power Spectrum of Neurophysiological Signal

10.4231/R7WQ01R7

Haiguang Wen , Zhongming Liu ORCID logo

09/30/2015

Matlab toolbox for separating the fractal (scale-free) component and oscillatory component in the power spectrum from the mixed time series

Bioinformatics Biomedical Engineering fractal scale-free

Position of MLL1 morphemes in human genomic DNA

10.4231/R7H41PBT

Daidong Wang , Elise Novorolsky , Minou Bina ORCID logo , Noorfatin J. Zulkefl , Phillip J. Wyss

03/04/2014

Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013).

Binding Sites Bioinformatics Cell division Chemistry Chromatin structure Cis-elements Codes in DNA CpG islands Gene bookmarking Gene Regulation Mammalian genomes Mitosis MLL MLL binding sites Mouse genome Regulatory codes TREs Trithorax response elements

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