PURR Registry

Automatic 4D flow MRI Segmentation Using the Standardized Difference of Means Velocity

10.4231/F75X-1N34

Bruce Craig , Jiacheng Zhang , Michael Markl , Neal Patel , Pavlos Vlachos , Sameer Ansari , Sean Michael Rothenberger , Susanne Schnell , Vitaliy Rayz

02/02/2023

We provide 4D flow MRI velocity measurements in two in vitro flow phantoms of a cerebral aneurysm. One phantom is unscaled (1-to-1), and the other is scaled by a factor of two in all dimensions (2-to-1).

angiography Biomedical Engineering hemodynamics Magnetic Resonance Velocimetry Matlab Phase Contrast Magnetic Resonance Imaging

mHealth hyperspectral learning for hemodynamics

10.4231/VAFP-DW68

Young L Kim

03/27/2023

A small sampling of hyperspectral data enables spectrally informed learning to recover a hypercube from a red-green-blue (RGB) image without complete hyperspectral measurements. Hyperspectral learning is capable of recovering full spectroscopic resolution

Biomedical Engineering hemodynamics Matlab mHealth spectral learning

Separating Fractal and Oscillatory Components in the Power Spectrum of Neurophysiological Signal

10.4231/R7WQ01R7

Haiguang Wen , Zhongming Liu

09/30/2015

Matlab toolbox for separating the fractal (scale-free) component and oscillatory component in the power spectrum from the mixed time series

Bioinformatics Biomedical Engineering fractal scale-free

A Non-parametric Bayesian Model for Joint Cell Clustering and Cluster Matching: Identification of Anomalous Sample Phenotypes with Random Effects.

10.4231/R7KK98PG

Bartlomiej P. Rajwa , Ferit Akova , Halid Ziya Yerebakan , Murat Dundar

09/03/2014

The manuscript presents a non-parametric Bayesian algorithm called ASPIRE (Anomalous Sample Phenotype Identification with Random Effects) able to identify phenotypic differences across batches of cytometry samples in the presence of random effects

AML Bayesian Biomedical Engineering BMC Bioinformatics Computer Science cytometry Dirichlet process Gaussian mixture model Interdisciplinary Research Life Sciences random effects

Source code for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision

10.4231/R7N58JJ3

Haiguang Wen , Jiayue Cao , Junxing Shi , Kun-Han Lu , Yizhen Zhang , Zhongming Liu

11/17/2017

This document includes the main source code (Matlab or Python) related to our study.

Biomedical Engineering deep learning FMR1 LIBI Matlab natural vision neural decoding Neural encoding Neuroscience Python Code Source Code

fMRI Data for Human Subjects During Musical Perception and Imagery

10.4231/R7W957B3

Gang Chen , Haiguang Wen , Kun-Han Lu , Yizhen Zhang , Zhongming Liu

01/05/2018

This fMRI dataset includes the original stimuli and the BOLD fMRI responses for a musical imagery study.

Biomedical Engineering fMRI Inter-Session Functional Connectivity Intra-Subject Reproducibility Music Imagery Neuroscience

Next Generation Calmodulin Affinity Purification Data

10.4231/R7Q81B9G

Julia Fraseur , Tamara L Kinzer-Ursem

06/01/2018

Coomassie-stained gels used in semi-quantitative analysis of purified calcineurin from calmodulin Sepharose resins.

Biomedical Engineering Calcineurin Calmodulin Protein

MicroCT based FE model of bone core with tissue heterogeneity and anisotropy

10.4231/R7CC0XX4

Joseph Wallace , Matthew R Allen , Max A Hammond , Thomas Siegmund

06/26/2018

This publication contains a finite element model for the analysis of bone core under consideration of bone tissue heterogeneity and tissue anisotropy.

Biomedical Engineering Bone Finite Element Analysis Mechanical Engineering

A Multi-state Model of the CaMKII Holoenzyme using MCell 3.3

10.4231/MV0Z-8Z57

Matthew C Pharris , Tamara L Kinzer-Ursem

07/29/2019

This model uses a specialized rule-based syntax in MCell 3.3 to model the twelve-subunit CaMKII holoenzyme without inducing combinatorial explosion. The model allows us to explore the regulation of CaMKII activation and autophosphorylation.

Biomedical Engineering Calcium Calmodulin Computational Modeling Kinase Neuroscience Protein Signaling Rule-Based Modeling Synaptic Plasticity

Population-specific brain templates for adolescent collision-sport athletes in Purdue Neurotrauma Group longitudinal database

10.4231/XTZT-P683

Ho-Ching Yang , Joseph V Rispoli , Thomas M Talavage , Wenbin Zhu , Yukai Zou

09/12/2019

Unbiased population-specific brain templates for local adolescent collision-sport athletes in the longitudinal database of Purdue Neurotrauma Group, including a T1-weighted template and a DTI template.

Adolescents Atlasing Biomedical Engineering Brain Informatics Morphometrics MRI Neuroscience NIfTI Spatial Normalization Spatial Warping Statistical Methods Trauma Workflow

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Total is 41 Results