Datasets

Subject
Creator
Type
Date

subject: Biomedical Engineering

Total is 44 Results
Weathered Agent-Based Model of Microglia-Plaque Interactions

10.4231/2YEY-TD12

Catherine Weathered ORCID logo , Elsje Pienaar

03/15/2023

Model code from "Microglia Roles in Alzheimer’s Disease: An Agent-Based Model to Elucidate Microglial Spatiotemporal Response to Beta-Amyloid"

agent based model Alzheimer's Disease Biomedical Engineering microglia model

MicroCT based FE model of bone core with tissue heterogeneity and anisotropy

10.4231/R7CC0XX4

Joseph Wallace , Matthew R Allen , Max A Hammond , Thomas Siegmund ORCID logo

06/26/2018

This publication contains a finite element model for the analysis of bone core under consideration of bone tissue heterogeneity and tissue anisotropy.

Biomedical Engineering Bone Finite Element Analysis Mechanical Engineering

Competitive Tuning of Ca2+/Calmodulin-Activated Proteins Provides a Compensatory Mechanism for AMPA Receptor Phosphorylation in Synaptic Plasticity

10.4231/R7VX0DS0

Matthew C Pharris , Tamara L. Kinzer-Ursem ORCID logo

07/30/2018

Code for the basic 4-state competitive binding model that builds on previous work by incorporating an additional competitor for calmodulin along with a number of downstream proteins. Also include is sample code for global sensitivity analysis...

Biomedical Engineering Calmodulin Neuroscience

T1-weighted brain atlas for adolescent collision-sport athletes in Purdue Neurotrauma Group longitudinal database

10.4231/4668-DM62

Ho-Ching Yang ORCID logo , Joseph V Rispoli ORCID logo , Thomas M Talavage ORCID logo , Wenbin Zhu , Yukai Zou ORCID logo

01/16/2019

A population-specific brain atlas based on the T1-weighted MR scans from 215 adolescent collision-sport athletes in the longitudinal database of Purdue Neurotrauma Group.

Adolescents Atlasing Biomedical Engineering Brain Informatics Morphometrics MRI Neuroscience Spatial Normalization Spatial Warping Statistical Methods Trauma Workflow

In vitro Volumetric Particle Velocimetry, Computational Fluid Dynamics (CFD), and in vivo 4D Flow MRI Hemodynamic Data in Two Patient-Specific Cerebral Aneurysms

10.4231/M5F1-QC84

Benjamin Dickerhoff , David Saloner , Melissa Brindise , Michael Markl , Pavlos Vlachos ORCID logo , Sean Rothenberger ORCID logo , Susanne Schnell , Vitaliy Rayz

08/23/2019

Data from a pulsatile volumetric particle velocimetry study using two patient-specific cerebral aneurysm models, processed using Shake the Box (STB). Associated in vivo MRI and CFD datasets are also provided.

Biomedical Engineering Cerebral Aneurysm CFD Experimental Tests Fluid Mechanics Matlab MRI PIV Shake the Box

A Multi-state Model of the CaMKII Holoenzyme using MCell 3.3

10.4231/MBPK-D277

Matthew C Pharris , Tamara L Kinzer-Ursem ORCID logo

03/11/2019

This model uses a specialized rule-based syntax in MCell 3.3 to model the twelve-subunit CaMKII holoenzyme without inducing combinatorial explosion. The model allows us to explore the regulation of CaMKII activation and autophosphorylation.

Biomedical Engineering Calmodulin Computational Modeling Neuroscience Protein Signaling

A multi-modality approach for enhancing 4D flow MRI via sparse representation

10.4231/FB9P-5991

Jiacheng Zhang , Melissa Brindise , Michael Markl , Pavlos Vlachos , Sean Rothenberger ORCID logo , Vitaliy Rayz

09/22/2021

Data and source code to enhance the blood flow measurements and the hemodynamic analysis with 4D flow MRI in cerebral aneurysms using multi-modality data and sparse representation.

Biomedical Engineering Cerebral Aneurysm CFD Fluid Mechanics MRI PIV

Population-specific brain atlases for early-to-middle adolescent collision-sport athletes

10.4231/6BAR-6W02

Apekshya Chhetri , Ho-Ching Yang ORCID logo , Joseph V Rispoli ORCID logo , Pratik Kashyap , Thomas M Talavage ORCID logo , Wenbin Zhu , Yukai Zou ORCID logo

08/03/2020

Population-specific brain atlases for early-to-middle adolescent collision-sport athletes in the longitudinal database of Purdue Neurotrauma Group, including cortical and white matter parcellations, a T1-weighted template, and a DTI template.

Adolescents Atlasing Biomedical Engineering Brain Informatics Morphometrics MRI Neuroscience NIfTI Spatial Normalization Statistical Methods Trauma Workflow

A Multi-state Model of the CaMKII Holoenzyme using MCell 3.3

10.4231/MV0Z-8Z57

Matthew C Pharris , Tamara L Kinzer-Ursem ORCID logo

07/29/2019

This model uses a specialized rule-based syntax in MCell 3.3 to model the twelve-subunit CaMKII holoenzyme without inducing combinatorial explosion. The model allows us to explore the regulation of CaMKII activation and autophosphorylation.

Biomedical Engineering Calcium Calmodulin Computational Modeling Kinase Neuroscience Protein Signaling Rule-Based Modeling Synaptic Plasticity

Population-specific brain templates for adolescent collision-sport athletes in Purdue Neurotrauma Group longitudinal database

10.4231/XTZT-P683

Ho-Ching Yang ORCID logo , Joseph V Rispoli ORCID logo , Thomas M Talavage ORCID logo , Wenbin Zhu , Yukai Zou ORCID logo

09/12/2019

Unbiased population-specific brain templates for local adolescent collision-sport athletes in the longitudinal database of Purdue Neurotrauma Group, including a T1-weighted template and a DTI template.

Adolescents Atlasing Biomedical Engineering Brain Informatics Morphometrics MRI Neuroscience NIfTI Spatial Normalization Spatial Warping Statistical Methods Trauma Workflow

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