Datasets

Subject
Creator
Type
Date

subject: Biochemistry type: dataset

Total is 46 Results
Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences

10.4231/D3DR2P83H

Daisuke Kihara ORCID logo , H. Huang , Y.H. Tan

03/08/2013

Supplementary materials for the paper: Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences. Proteins: Structure, Function and Bioinformatics 64: 587-600. (2006)

Amino Acids/chemistry Biochemistry Bioinformatics Molecular Biosciences Protein Folding

Comparative genomics of small RNAs in bacterial genomes

10.4231/D37659F6Q

Daisuke Kihara ORCID logo , Stan Luban

03/08/2013

Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.

Bacterial Bacterial/Genetics Biochemistry Bioinformatics Deinococcus/Genetics Escherichiacoli/Metabolism Molecular Biosciences Multigene Family RNA

Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria

10.4231/D3BZ61792

Bin Li , Daisuke Kihara ORCID logo , Manish Agrawal , Srinivasan Turuvekere

03/08/2013

Supplementary material for the paper: Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria. Proteins. 2008 May 1;71(2):670-83.

Argininosuccinate Synthase Binding Sites Biochemistry Bioinformatics Computer Simulation Molecular Biosciences Protein Structure Sensitivity and Specificity Tertiary Tetrahydrofolate Dehydrogenase/chemistry

Limitations and Potentials of Current Motif Discovery Algorithms

10.4231/D33F4KN2K

Bin Li , Daisuke Kihara ORCID logo , Jianjun Hu

03/08/2013

Supplementary material for the papers: Limitations and Potentials of Current Motif Discovery Algorithms, Nucleic Acids Res. 2005; 33(15): 4899–4913

Algorithms Base Sequence Binding Sites Biochemistry Bioinformatics Computational Biology / Methods DNA/Chemistry DNA/methods Escherichia coli/Genetics Factors/Metabolism Markov Chains Markov Chains Regulatory Sequences Molecular Biosciences Regulon Sequence Alignment Sequence Analysis

Metabolic Source Isotopic Pair Labeling and Genome-Wide Association Are Complementary Tools for the Identification of Metabolite-Gene Associations in Plants

10.4231/1702-6M85

Brian Dilkes ORCID logo , Clint C S Chapple ORCID logo , Cole Wunderlich ORCID logo , Jeffrey Simpson ORCID logo , Xu Li

03/08/2021

Development of PODIUM: A tool to identify and extract from untargeted LC-MS data MS features that incorporated 13C-fed isotopic labels.

Biochemistry liquid chromatography–mass spectrometry (LC–MS) metabolomics Plant Metabolism stable isotope labeling untargeted metabolomics analyses

Summer Science Program in Biochemistry - Characterization of the Cdc14 phosphatase homolog from Aspergillus flavus

10.4231/H3N7-QB39

Fenry Wilson Zhou , James Yuxuan Chen , Mark C Hall ORCID logo , Monet Jowers , Ricardo Jean Linares , Sein Lee , Stephanie Zhang

08/27/2020

In SSP Biochemistry, high school participants conduct group research projects to characterize the Cdc14 phosphatase homolog from a phytopathogenic fungus and explore its potential as a novel antifungal target to protect crops from disease.

antifungal design Aspergillus flavus Biochemistry Cdc14 phosphatase enzyme function high school summer research Phytopathogenic fungi Plant pathogens Summer Science Program

Summer Science Program in Biochemistry - Characterization of the Cdc14 phosphatase homolog from Botrytis cinerea

10.4231/B1KA-GZ57

Alyssa Marie Questell , Kevin Tan , Mai N. Hoang , Maniratnam Meena Iyer , Mark C Hall ORCID logo , Márk Tibor Mészárik ORCID logo , Ruqaiyah A Damrah

08/25/2020

In SSP Biochemistry, high school participants conduct group research projects to characterize the Cdc14 phosphatase homolog from a phytopathogenic fungus and explore its potential as a novel antifungal target to protect crops from disease

antifungal design Biochemistry Botrytis cinerea Cdc14 phosphatase enzyme function high school summer research Phytopathogenic fungi Plant pathogens Summer Science Program

Summer Science Program in Biochemistry - Characterization of the Cdc14 phosphatase homolog from Aspergillus niger

10.4231/3GEN-D590

Charles William Coffey , Jesse Eugene Pattison , Juan Antonio Serna , Mark C Hall ORCID logo , Molly Ann Szpakowski , Myria Chen , Stephanie Zhang

08/25/2020

In SSP Biochemistry, high school participants conduct group research projects to characterize the Cdc14 phosphatase homolog from a phytopathogenic fungus and explore its potential as a novel antifungal target to protect crops from disease

antifungal design Aspergillus niger Biochemistry Cdc14 phosphatase enzyme function high school summer research Phytopathogenic fungi Plant pathogens Summer Science Program

Summer Science Program in Biochemistry - Characterization of the Cdc14 phosphatase homolog from Cercospora zeina

10.4231/DF06-7C69

Cecilia Leber ORCID logo , Jeffrey Han , Jenny Cai , Mark C Hall ORCID logo , Nikhit Kambdur , Sveni Thalor

08/25/2020

In SSP Biochemistry, high school participants conduct group research projects to characterize the Cdc14 phosphatase homolog from a phytopathogenic fungus and explore its potential as a novel antifungal target to protect crops from disease

antifungal design Biochemistry Cdc14 phosphatase Cercospora zeina enzyme function high school summer research Phytopathogenic fungi Plant pathogens Summer Science Program

Summer Science Program in Biochemistry - Characterization of the Cdc14 phosphatase homolog from Claviceps purpurea

10.4231/8RG5-FN11

Allen Zihang Wu , Ayse Beren Guler , Benjamin Ari Schussheim ORCID logo , Callee Elizabeth Cabrera , Lucien Tsai , Mark C Hall ORCID logo , Rupin Mittal

08/25/2020

In SSP Biochemistry, high school participants conduct group research projects to characterize the Cdc14 phosphatase homolog from a phytopathogenic fungus and explore its potential as a novel antifungal target to protect crops from disease

antifungal design Biochemistry Cdc14 phosphatase Claviceps purpurea enzyme function high school summer research Phytopathogenic fungi Plant pathogens Summer Science Program

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