PURR Registry

A Multi-state Model of the CaMKII Holoenzyme using MCell 3.3

10.4231/MV0Z-8Z57

Matthew C Pharris , Tamara L Kinzer-Ursem

07/29/2019

This model uses a specialized rule-based syntax in MCell 3.3 to model the twelve-subunit CaMKII holoenzyme without inducing combinatorial explosion. The model allows us to explore the regulation of CaMKII activation and autophosphorylation.

Biomedical Engineering Calcium Calmodulin Computational Modeling Kinase Neuroscience Protein Signaling Rule-Based Modeling Synaptic Plasticity

Competitive Tuning of Ca2+/Calmodulin-Activated Proteins Provides a Compensatory Mechanism for AMPA Receptor Phosphorylation in Synaptic Plasticity

10.4231/R7ST7N11

Matthew C Pharris , Tamara L. Kinzer-Ursem

02/16/2018

Code for the basic 4-state competitive binding model that builds on previous work by incorporating an additional competitor for calmodulin along with a number of downstream proteins. Also include is sample code for global sensitivity analysis...

Biomedical Engineering Calmodulin Neuroscience

Data for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision Tests - Subject 1

10.4231/R7X63K3M

Haiguang Wen , Jiayue Cao , Junxing Shi , Kun-Han Lu , Yizhen Zhang , Zhongming Liu

09/15/2017

This is a video-fMRI dataset for subject 1 (out of three) acquired by the Laboratory of Integrated Brain Imaging (LIBI),

Biomedical Engineering deep learning fMRI LIBI natural vision neural decoding Neural encoding Neuroscience

Data for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision Tests - Subject 2

10.4231/R7NS0S1F

Haiguang Wen , Jiayue Cao , Junxing Shi , Kun-Han Lu , Yizhen Zhang , Zhongming Liu

09/18/2017

This is a video-fMRI dataset for subject 2 (out of three) acquired by the Laboratory of Integrated Brain Imaging (LIBI).

Biomedical Engineering deep learning fMRI LIBI natural vision neural decoding Neural encoding Neuroscience

Data for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision Tests - Subject 3

10.4231/R7J101BV

Haiguang Wen , Jiayue Cao , Junxing Shi , Kun-Han Lu , Yizhen Zhang , Zhongming Liu

09/15/2017

This is a video-fMRI dataset for subject 3 (out of three) acquired by the Laboratory of Integrated Brain Imaging (LIBI).

Biomedical Engineering deep learning fMRI LIBI movie stimuli natural vision neural decoding Neural encoding Neuroscience

Data for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision Tests - Stimuli

10.4231/R71Z42KK

Haiguang Wen , Jiayue Cao , Junxing Shi , Kun-Han Lu , Yizhen Zhang , Zhongming Liu

09/15/2017

This is a video-fMRI dataset contains the videos with stimuli acquired by the Laboratory of Integrated Brain Imaging (LIBI).

Biomedical Engineering deep learning fMRI LIBI movie stimuli natural vision neural decoding Neural encoding Neuroscience

Source code for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision

10.4231/R7V98675

Haiguang Wen , Jiayue Cao , Junxing Shi , Kun-Han Lu , Yizhen Zhang , Zhongming Liu

09/25/2017

This document includes the main source code (Matlab or Python) related to our study.

Biomedical Engineering deep learning FMR1 LIBI Matlab natural vision neural decoding Neural encoding Neuroscience Python Code Source Code

Repeated Free-Viewing of a Natural Movie Stimulus Using fMRI

10.4231/R71V5C4T

Haiguang Wen , Kun-Han Lu , Lauren Kelly Marussich , Shao-Chin Hung , Zhongming Liu

10/06/2017

Video-fMRI dataset acquired by the Laboratory of Integrated Brain Imaging (LIBI, https://engineering.purdue.edu/libi) at Purdue University.

Biomedical Engineering fMRI Intra-Subject Reproducibility LIBI movie stimuli natural vision Neuroscience

Source code for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision

10.4231/R7N58JJ3

Haiguang Wen , Jiayue Cao , Junxing Shi , Kun-Han Lu , Yizhen Zhang , Zhongming Liu

11/17/2017

This document includes the main source code (Matlab or Python) related to our study.

Biomedical Engineering deep learning FMR1 LIBI Matlab natural vision neural decoding Neural encoding Neuroscience Python Code Source Code

fMRI Data for Human Subjects During Musical Perception and Imagery

10.4231/R7W957B3

Gang Chen , Haiguang Wen , Kun-Han Lu , Yizhen Zhang , Zhongming Liu

01/05/2018

This fMRI dataset includes the original stimuli and the BOLD fMRI responses for a musical imagery study.

Biomedical Engineering fMRI Inter-Session Functional Connectivity Intra-Subject Reproducibility Music Imagery Neuroscience

Datasets

Subject

Creator

Type

Date

Total is 20 Results

A Multi-state Model of the CaMKII Holoenzyme using MCell 3.3

Competitive Tuning of Ca2+/Calmodulin-Activated Proteins Provides a Compensatory Mechanism for AMPA Receptor Phosphorylation in Synaptic Plasticity

Data for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision Tests - Subject 1

Data for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision Tests - Subject 2

Data for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision Tests - Subject 3

Data for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision Tests - Stimuli

Source code for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision

Repeated Free-Viewing of a Natural Movie Stimulus Using fMRI

Source code for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision

fMRI Data for Human Subjects During Musical Perception and Imagery

Datasets

All fields DOI Author Subject Search

Subject

Creator

Type

Date

Total is 20 Results