PURR Registry

Metabolic Source Isotopic Pair Labeling and Genome-Wide Association Are Complementary Tools for the Identification of Metabolite-Gene Associations in Plants

10.4231/1702-6M85

Brian Dilkes , Clint C S Chapple , Cole Wunderlich , Jeffrey Simpson , Xu Li

03/08/2021

Development of PODIUM: A tool to identify and extract from untargeted LC-MS data MS features that incorporated 13C-fed isotopic labels.

Biochemistry liquid chromatography–mass spectrometry (LC–MS) metabolomics Plant Metabolism stable isotope labeling untargeted metabolomics analyses

Pharris et al. MethodsX (2017) Supplemental Data Set

10.4231/R7M043DC

David Umulis , Matthew Pharris , Tamara Kinzer-Ursem , Tzu-Ching Wu , Vikki Weake , Xinping Chen , Xu Wang

04/19/2017

Supplemental data and full source code for smFISH analysis in Drosophila melanogaster adult photoreceptor neurons.

Biochemistry Drosophila Photoreceptor RNAscope smFISH

Supporting data for Ma and Weake 2014 JoVE publication

10.4231/R7TD9V91

Jingqun Ma , Vikki Marie Weake

02/06/2017

Supporting and raw data for Figures 1, 2, 3 and Table 1 from: Ma, J. and Weake, V.M. (2014). Affinity-based isolation of tagged nuclei from Drosophila tissues for gene expression analysis. Journal of Visualized Experiments 85. PMID:24686501.

Biochemistry cell-type specific Drosophila Gene Expression nuclei affinity purification nuclei isolation

Genetic engineering of Arabidopsis to overproduce disinapoyl esters, potential lignin modification molecules

10.4231/R77H1GJB

Clint C S Chapple , Huaping Mo , Jeong Kim , Shinyoung Lee

02/02/2017

BBIO-D-16-00198R1 Genetic engineering of Arabidopsis to overproduce disinapoyl esters, potential lignin modification molecules Shinyoung Lee; Huaping Mo; Jeong Im Kim; Clint Chapple. Biotechnology for Biofuels

Arabidopsis Biochemistry Biotechnology

Supporting data for Ma et al. 2016 G3 publication

10.4231/R7PG1PQR

Jingqun Ma , Pete E Pascuzzi , Vikki Marie Weake

02/20/2017

Supporting and raw data for Figures 1 - 5 and Figure S1 from: Ma et al. (2016) Transcriptome Profiling Identifies Multiplexin as a target of SAGA Deubiquitinase Activity in Glia.... G3 (Bethesda). PMID: 27261002.

axon guidance Biochemistry Drosophila glia Neuroscience nonstop RNA_seq SAGA sgf11 Transcriptome

Characterizing a gene expression toolkit for eye- and photoreceptor-specific expression in Drosophila - Supporting data for Escobedo et al. (2021)

10.4231/6AF9-3085

Spencer Escobedo , Vikki Marie Weake

02/23/2021

Supporting and raw data for Escobedo et al. (2021) including microscopy images.

Biochemistry Drosophila Eye Gal4 Photoreceptor

Regulation of Phaeodactylum plastid gene transcription

10.4231/ME5R-C919

Gilbert Kayanja , Iskander Ibrahim , Sujith Puthiyaveetil

05/19/2021

This dataset contains raw data used for plotting the figures associated with the following publication https://link.springer.com/article/10.1007/s11120-020-00811-1

Biochemistry Gene Regulation light harvesting photosynthesis

Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors - Supporting data for Hall and Ma et al. (2018)

10.4231/R77W69FM

Hana Hall , Jingqun Ma , Sudhanshu Shekhar , Vikki Weake , Walter Leon-Salas

06/20/2018

Supporting and raw data for Hall and Ma et al. (2018) Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors. BMC Neuroscience.

Biochemistry Blue Light Differential gene expresion Drosophila Eye Gene Expression Profiling Retinal Degeneration RNA_seq Transcriptome

Proper splicing contributes to visual function in the aging Drosophila eye - Supporting data for Stegeman et al. (2018)

10.4231/R7ZG6QGD

Hana Hall , Henry Chang , Rachel Stegeman , Spencer Escobedo , Vikki Weake

06/07/2018

Supporting data and protocols for for Stegeman et al. (2018). Proper splicing contributes to visual function in the aging Drosophila eye. Aging Cell.

Aging Biochemistry Drosophila Eye Gene Expression Profiling Splicing Transcriptome Vision

The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability - Supporting data for Torres-Zelada et al. (2018)

10.4231/R72V2DD0

Aktan Alpsoy , Benjamin D. Anderson , Eliana F. Torres-Zelada , Emily C. Dykhuizen , Laurence Florens , Michael P. Washburn , Robert E. Stephenson , Selene K. Swanson , Vikki Weake

12/11/2018

Supporting data and protocols for for Torres-Zelada et al. (2018). The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability. Journal of Cell Science.

Biochemistry Chiffon Dbf4 Drosophila Gcn5 Gene Expression Histone Acetylation Replication

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Total is 46 Results