Datasets

Subject
Creator
Type
Date

subject: Gene Regulation

Total is 17 Results
Positions of predicted CTCF binding sites and unique A and B-repeats in the build hg19 of the Human Genome

10.4231/R74B2ZHD

Minou Bina ORCID logo

01/25/2018

Supplementary materials for a publication entitled “Assessment of the CTCF Binding Sites and Repeat-Positions Upstream the Human H19 Gene“ Bina, M. January 2018, bioRxiv doi: 10.1101/250407

Binding Sites Chemistry Chromatin Boundaries Cohesin CTCF Gene Regulation Genomic imprinting Genomics H19 Human Genome IGF2 RAD21 SMC3

Density of ZFBS-Morph overlaps in the build mm9 of the mouse genome

10.4231/R7W37TJH

Minou Bina ORCID logo , Phillip J. Wyss , Xiaohui Carol Song

04/25/2018

Supplementary material for the publication entitled “Imprinted Control Regions include composite DNA elements consisting of the ZFP57 binding site overlapping MLL1 Morphemes” Bina M.  Genomics, 109: 265–273 (2017).

Chemistry Codes in DNA DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions

Predicted regulatory signals in the human HOXA locus: supplemental material for the report: Discovering sequences with potential regulatory characteristics

10.4231/D3DZ03214

Gregory E. Crawford , Minou Bina ORCID logo , Phillip J. Wyss , Sang P. Park , Sheryl A. Lazarus , Syed A. Shah , Wenhui Ren , Wojciech Szpankowski , Xiaohui C. Song

12/17/2013

Supplementary materials for the paper: Discovering sequences with potential regulatory characteristics. Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Genomics. 2009 Apr;93(4):314-22

Binding-site Biochemistry Bioinformatics Codes in Human DNA DNASE-I hypersensitive sites Gene Regulation Genetic Vocabulary Human Genome Hypersensitive Sites Molecular Biosciences Promoter Regions Regulatory Signals Sequence Context Transcription factor binding sites Transcription Factors

An overview of peak positions –in plots of ZFBS-morph-overlap density– with respect to known ICRs/gDMRs in the mouse genome

10.4231/32C9-G644

Minou Bina ORCID logo

06/04/2020

Supplementary material for the publication entitled “Simultaneous discovery of candidate imprinted genes and Imprinting Control Regions in the mouse genome” Bina M., and Wyss P. bioRxiv doi: https://doi.org/10.1101/780551 (2019).

Chemistry DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions Mammalian genomes Mouse genome ZFP57

Positions of known ICRs/gDMRs with respect to peaks in plots of ZFBS-morph-overlap density in the mouse genome

10.4231/V87T-4X79

Minou Bina ORCID logo

06/04/2020

Supplementary material for the publication entitled “Simultaneous discovery of candidate imprinted genes and Imprinting Control Regions in the mouse genome” Bina M., and Wyss P. bioRxiv doi: https://doi.org/10.1101/780551 (2019).

Binding Sites Chemistry DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions Mammalian genomes MLL1 morphemes Mouse genome ZFP57

The positions of ZFBS and ZFBS-Morph overlaps in the build canFam2 of the dog genome

10.4231/8VWJ-JP51

Minou Bina ORCID logo , Phillip J. Wyss , Xiaohui Carol Song

09/28/2020

Locating regulatory DNA elements in the dog genome.

Canines Chemistry Codes in dog DNA CpG-rich motifs DMRs Dog genomics Gene Regulation Genomic imprinting Germline DMRs ICRs KMT2A MLL1 Binding Sites MLL1 morphemes ZFP57

Density of ZFBS-Morph overlaps in the build canFam2 of the dog genome

10.4231/P6C1-5419

Minou Bina ORCID logo , Phillip Wyss , Xiaohui Song

06/16/2020

This publication provides a file (in wig.gz format) for examining the density of ZFBS-Morph overlaps at the UCSC genome browser.

Chemistry Codes in DNA DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions KMT2A MLL1 Binding Sites MLL1 morphemes ZFP57

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