10.4231/D37659F6Q
03/08/2013
Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.
Bacterial Bacterial/Genetics Biochemistry Bioinformatics Deinococcus/Genetics Escherichiacoli/Metabolism Molecular Biosciences Multigene Family RNA
10.4231/D3BZ61792
Bin Li
,
Daisuke Kihara
,
Manish Agrawal
,
Srinivasan Turuvekere
03/08/2013
Supplementary material for the paper: Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria. Proteins. 2008 May 1;71(2):670-83.
Argininosuccinate Synthase Binding Sites Biochemistry Bioinformatics Computer Simulation Molecular Biosciences Protein Structure Sensitivity and Specificity Tertiary Tetrahydrofolate Dehydrogenase/chemistry
10.4231/D33F4KN2K
Bin Li
,
Daisuke Kihara
,
Jianjun Hu
03/08/2013
Supplementary material for the papers: Limitations and Potentials of Current Motif Discovery Algorithms, Nucleic Acids Res. 2005; 33(15): 4899–4913
Algorithms Base Sequence Binding Sites Biochemistry Bioinformatics Computational Biology / Methods DNA/Chemistry DNA/methods Escherichia coli/Genetics Factors/Metabolism Markov Chains Markov Chains Regulatory Sequences Molecular Biosciences Regulon Sequence Alignment Sequence Analysis
10.4231/1702-6M85
Brian Dilkes
,
Clint C S Chapple
,
Cole Wunderlich
,
Jeffrey Simpson
,
Xu Li
03/08/2021
Development of PODIUM: A tool to identify and extract from untargeted LC-MS data MS features that incorporated 13C-fed isotopic labels.
Biochemistry liquid chromatography–mass spectrometry (LC–MS) metabolomics Plant Metabolism stable isotope labeling untargeted metabolomics analyses
10.4231/R7M043DC
David Umulis
,
Matthew Pharris
,
Tamara Kinzer-Ursem
,
Tzu-Ching Wu
,
Vikki Weake
,
Xinping Chen
,
Xu Wang
04/19/2017
Supplemental data and full source code for smFISH analysis in Drosophila melanogaster adult photoreceptor neurons.
10.4231/R7TT4P5D
05/31/2018
The 282 member maize association panel was grown under irrigated and non-irrigated conditions and kernels were phenotyped for ionome and isotope traits.
10.4231/R77W69FM
Hana Hall
,
Jingqun Ma
,
Sudhanshu Shekhar
,
Vikki Weake
,
Walter Leon-Salas
06/20/2018
Supporting and raw data for Hall and Ma et al. (2018) Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors. BMC Neuroscience.
Biochemistry Blue Light Differential gene expresion Drosophila Eye Gene Expression Profiling Retinal Degeneration RNA_seq Transcriptome
10.4231/R7ZG6QGD
Hana Hall
,
Henry Chang
,
Rachel Stegeman
,
Spencer Escobedo
,
Vikki Weake
06/07/2018
Supporting data and protocols for for Stegeman et al. (2018). Proper splicing contributes to visual function in the aging Drosophila eye. Aging Cell.
Aging Biochemistry Drosophila Eye Gene Expression Profiling Splicing Transcriptome Vision
10.4231/R72V2DD0
Aktan Alpsoy
,
Benjamin D. Anderson
,
Eliana F. Torres-Zelada
,
Emily C. Dykhuizen
,
Laurence Florens
,
Michael P. Washburn
,
Robert E. Stephenson
,
Selene K. Swanson
,
Vikki Weake
12/11/2018
Supporting data and protocols for for Torres-Zelada et al. (2018). The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability. Journal of Cell Science.
Biochemistry Chiffon Dbf4 Drosophila Gcn5 Gene Expression Histone Acetylation Replication
10.4231/0FAA-GK65
Jennifer Wisecaver
,
Patrick Edger
02/18/2019
Global coexpression analysis of blueberry genome identify genes co-regulated during fruit development and associated with phytonutrient biosynthesis
Biochemistry Blueberry Gene Expression Plant Metabolism RStudio
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