Subject
- Mechanical Engineering 4
- Bioinformatics 3
- Computer Science 2
- Interdisciplinary Research 2
- Life Sciences 2
Creator
- Zhongming Liu, 0000-0002-8773-4204 12
- Haiguang Wen 10
- Kun-Han Lu, 0000-0002-0355-8515 8
- Junxing Shi 7
- Yizhen Zhang 7
- Jiayue Cao 6
- Michael Markl 6
- Vitaliy Rayz 6
- Ho-Ching Yang, 0000-0003-2670-1772 5
- Joseph V Rispoli, 0000-0003-4514-3390 5
Type
- Dataset 41
Date
subject: Biomedical Engineering type: dataset
Total is 41 Results
A Multi-state Model of the CaMKII Holoenzyme using MCell 3.3
10.4231/MV0Z-8Z57
Matthew C Pharris
,
Tamara L Kinzer-Ursem
07/29/2019
This model uses a specialized rule-based syntax in MCell 3.3 to model the twelve-subunit CaMKII holoenzyme without inducing combinatorial explosion. The model allows us to explore the regulation of CaMKII activation and autophosphorylation.
Biomedical Engineering Calcium Calmodulin Computational Modeling Kinase Neuroscience Protein Signaling Rule-Based Modeling Synaptic Plasticity
Drosophila Optical Stimulator - hardware files
10.4231/R75T3HHJ
Donald Ready
,
Taylor Zigon
,
Vikki Weake
,
Walter Leon-Salas
,
Xinping Chen
06/23/2017
This publication contains the electronic files required to build an optical stimulator for fruit flies. The stimulator uses red and blue light-emitting diodes (LEDs) and an embedded computer to generate light at different power density levels.
Biomedical Engineering Drosophila Embedded System Engineering Technology Light-Emitting Diode Open Hardware Optical Stimulation
MicroCT based FE model of single bone trabeculae with tissue heterogeneity and anisotropy
10.4231/R7H41PP9
Joseph Wallace
,
Matthew R Allen
,
Max Hammond
,
Thomas Siegmund
06/26/2018
This publication contains a finite element model for the analysis of single bone trabeculae under consideration of bone tissue heterogeneity and tissue anisotropy.
Biomedical Engineering Bone Finite Element Analysis Mechanical Engineering
Drosophila Optical Stimulator - software files
10.4231/R7222RS4
Donald Ready
,
Taylor Zigon
,
Vikki Weake
,
Walter Leon-Salas
,
Xinping Chen
06/23/2017
This publication contains the software required to build an optical stimulator for fruit flies. The stimulator uses red and blue light-emitting diodes (LEDs) and an embedded computer to generate light at different power density levels.
Biomedical Engineering Drosophila Embedded Software Embedded System Engineering Technology Optical Stimulation Python Code
Visualized layer-wise visual features in deep residual neural network
10.4231/R7PR7T1G
Haiguang Wen
,
Junxing Shi
,
Wei Chen
,
Zhongming Liu
06/29/2017
Deep residual neural network is a brain-inspired computational model. 50 layers of neuron-like computational units are stacked into a bottom-up hierarchy. Features encoded at units are visualized for intuitively understanding the internal...
Biomedical Engineering deep learning natural vision Neural encoding Object Recognition
Competitive Tuning of Ca2+/Calmodulin-Activated Proteins Provides a Compensatory Mechanism for AMPA Receptor Phosphorylation in Synaptic Plasticity
10.4231/R7ST7N11
Matthew C Pharris
,
Tamara L. Kinzer-Ursem
02/16/2018
Code for the basic 4-state competitive binding model that builds on previous work by incorporating an additional competitor for calmodulin along with a number of downstream proteins. Also include is sample code for global sensitivity analysis...
Next Generation Calmodulin Affinity Purification Data
10.4231/R7Q81B9G
Julia Fraseur
,
Tamara L Kinzer-Ursem
06/01/2018
Coomassie-stained gels used in semi-quantitative analysis of purified calcineurin from calmodulin Sepharose resins.
MicroCT based FE model of bone core with tissue heterogeneity and anisotropy
10.4231/R7CC0XX4
Joseph Wallace
,
Matthew R Allen
,
Max A Hammond
,
Thomas Siegmund
06/26/2018
This publication contains a finite element model for the analysis of bone core under consideration of bone tissue heterogeneity and tissue anisotropy.
Biomedical Engineering Bone Finite Element Analysis Mechanical Engineering
Competitive Tuning of Ca2+/Calmodulin-Activated Proteins Provides a Compensatory Mechanism for AMPA Receptor Phosphorylation in Synaptic Plasticity
10.4231/R7VX0DS0
Matthew C Pharris
,
Tamara L. Kinzer-Ursem
07/30/2018
Code for the basic 4-state competitive binding model that builds on previous work by incorporating an additional competitor for calmodulin along with a number of downstream proteins. Also include is sample code for global sensitivity analysis...
Simplicity of K-means versus deepness of Deep Learning. A Case of Unsupervised Feature Learning with Limited Data
10.4231/R7N58J9Z
Baichuan Zhang , Bartlomiej P. Rajwa , Murat Dundar , Qiang Kou , Yicheng He
10/01/2015
A study contrasting K-means-based unsupervised feature learning and deep learning techniques for small data sets with limited intra- as well as inter-class diversity
bacterial colonies BARDOT Biomedical Engineering Computer Science deep learning Elastic light scattering Interdisciplinary Research K-Means Clustering Life Sciences Machine Learning representation learning
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Results 1 - 10 of 41