Subject
- Mechanical Engineering 4
- Bioinformatics 3
- Computer Science 2
- Interdisciplinary Research 2
- Life Sciences 2
Creator
- Zhongming Liu, 0000-0002-8773-4204 13
- Haiguang Wen 11
- Kun-Han Lu, 0000-0002-0355-8515 9
- Junxing Shi 8
- Yizhen Zhang 8
- Jiayue Cao 7
- Michael Markl 7
- Vitaliy Rayz 7
- Melissa Brindise 6
- Pavlos Vlachos, 0000-0002-8040-9257 6
Type
Date
subject: Biomedical Engineering
Total is 44 Results
Competitive Tuning of Ca2+/Calmodulin-Activated Proteins Provides a Compensatory Mechanism for AMPA Receptor Phosphorylation in Synaptic Plasticity
10.4231/R7ST7N11
Matthew C Pharris
,
Tamara L. Kinzer-Ursem
02/16/2018
Code for the basic 4-state competitive binding model that builds on previous work by incorporating an additional competitor for calmodulin along with a number of downstream proteins. Also include is sample code for global sensitivity analysis...
In vitro Volumetric Particle Velocimetry, Computational Fluid Dynamics (CFD), and in vivo 4D Flow MRI Hemodynamic Data in Two Patient-Specific Cerebral Aneurysms
10.4231/M5F1-QC84
Benjamin Dickerhoff
,
David Saloner
,
Melissa Brindise
,
Michael Markl
,
Pavlos Vlachos
,
Sean Rothenberger
,
Susanne Schnell
,
Vitaliy Rayz
08/23/2019
Data from a pulsatile volumetric particle velocimetry study using two patient-specific cerebral aneurysm models, processed using Shake the Box (STB). Associated in vivo MRI and CFD datasets are also provided.
Biomedical Engineering Cerebral Aneurysm CFD Experimental Tests Fluid Mechanics Matlab MRI PIV Shake the Box
A Multi-state Model of the CaMKII Holoenzyme using MCell 3.3
10.4231/MBPK-D277
Matthew C Pharris
,
Tamara L Kinzer-Ursem
03/11/2019
This model uses a specialized rule-based syntax in MCell 3.3 to model the twelve-subunit CaMKII holoenzyme without inducing combinatorial explosion. The model allows us to explore the regulation of CaMKII activation and autophosphorylation.
Biomedical Engineering Calmodulin Computational Modeling Neuroscience Protein Signaling
A Multi-state Model of the CaMKII Holoenzyme using MCell 3.3
10.4231/MV0Z-8Z57
Matthew C Pharris
,
Tamara L Kinzer-Ursem
07/29/2019
This model uses a specialized rule-based syntax in MCell 3.3 to model the twelve-subunit CaMKII holoenzyme without inducing combinatorial explosion. The model allows us to explore the regulation of CaMKII activation and autophosphorylation.
Biomedical Engineering Calcium Calmodulin Computational Modeling Kinase Neuroscience Protein Signaling Rule-Based Modeling Synaptic Plasticity
Population-specific brain templates for adolescent collision-sport athletes in Purdue Neurotrauma Group longitudinal database
10.4231/XTZT-P683
Ho-Ching Yang
,
Joseph V Rispoli
,
Thomas M Talavage
,
Wenbin Zhu
,
Yukai Zou
09/12/2019
Unbiased population-specific brain templates for local adolescent collision-sport athletes in the longitudinal database of Purdue Neurotrauma Group, including a T1-weighted template and a DTI template.
Adolescents Atlasing Biomedical Engineering Brain Informatics Morphometrics MRI Neuroscience NIfTI Spatial Normalization Spatial Warping Statistical Methods Trauma Workflow
Source code for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision
10.4231/R7V98675
Haiguang Wen
,
Jiayue Cao
,
Junxing Shi
,
Kun-Han Lu
,
Yizhen Zhang
,
Zhongming Liu
09/25/2017
This document includes the main source code (Matlab or Python) related to our study.
Biomedical Engineering deep learning FMR1 LIBI Matlab natural vision neural decoding Neural encoding Neuroscience Python Code Source Code
Repeated Free-Viewing of a Natural Movie Stimulus Using fMRI
10.4231/R71V5C4T
Haiguang Wen
,
Kun-Han Lu
,
Lauren Kelly Marussich
,
Shao-Chin Hung
,
Zhongming Liu
10/06/2017
Video-fMRI dataset acquired by the Laboratory of Integrated Brain Imaging (LIBI, https://engineering.purdue.edu/libi) at Purdue University.
Biomedical Engineering fMRI Intra-Subject Reproducibility LIBI movie stimuli natural vision Neuroscience
Source code for Neural Encoding and Decoding with Deep Learning for Dynamic Natural Vision
10.4231/R7N58JJ3
Haiguang Wen
,
Jiayue Cao
,
Junxing Shi
,
Kun-Han Lu
,
Yizhen Zhang
,
Zhongming Liu
11/17/2017
This document includes the main source code (Matlab or Python) related to our study.
Biomedical Engineering deep learning FMR1 LIBI Matlab natural vision neural decoding Neural encoding Neuroscience Python Code Source Code
fMRI Data for Human Subjects During Musical Perception and Imagery
10.4231/R7W957B3
Gang Chen
,
Haiguang Wen
,
Kun-Han Lu
,
Yizhen Zhang
,
Zhongming Liu
01/05/2018
This fMRI dataset includes the original stimuli and the BOLD fMRI responses for a musical imagery study.
Biomedical Engineering fMRI Inter-Session Functional Connectivity Intra-Subject Reproducibility Music Imagery Neuroscience
Next Generation Calmodulin Affinity Purification Data
10.4231/R7Q81B9G
Julia Fraseur
,
Tamara L Kinzer-Ursem
06/01/2018
Coomassie-stained gels used in semi-quantitative analysis of purified calcineurin from calmodulin Sepharose resins.
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