Datasets

Subject
Creator
Type
Date

subject: Biochemistry type: dataset

Total is 46 Results
Threading Without Optimizing Weighting Factor for the Scoring Function Proteins

10.4231/D3PK0719W

Daisuke Kihara ORCID logo , David Yifeng

02/14/2013

Supplementary Material for the Paper: Threading Without Optimizing Weighting Factor for the Scoring Function Proteins, in revision (2008). Proteins. 2008 Nov 15;73(3):581-96. doi: 10.1002/prot.22082.

Algorithms Biochemistry Bioinformatics databases Molecular Biosciences Protein Proteins / chemistry

Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences

10.4231/D3DR2P83H

Daisuke Kihara ORCID logo , H. Huang , Y.H. Tan

03/08/2013

Supplementary materials for the paper: Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences. Proteins: Structure, Function and Bioinformatics 64: 587-600. (2006)

Amino Acids/chemistry Biochemistry Bioinformatics Molecular Biosciences Protein Folding

Comparative genomics of small RNAs in bacterial genomes

10.4231/D37659F6Q

Daisuke Kihara ORCID logo , Stan Luban

03/08/2013

Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.

Bacterial Bacterial/Genetics Biochemistry Bioinformatics Deinococcus/Genetics Escherichiacoli/Metabolism Molecular Biosciences Multigene Family RNA

Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria

10.4231/D3BZ61792

Bin Li , Daisuke Kihara ORCID logo , Manish Agrawal , Srinivasan Turuvekere

03/08/2013

Supplementary material for the paper: Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria. Proteins. 2008 May 1;71(2):670-83.

Argininosuccinate Synthase Binding Sites Biochemistry Bioinformatics Computer Simulation Molecular Biosciences Protein Structure Sensitivity and Specificity Tertiary Tetrahydrofolate Dehydrogenase/chemistry

Limitations and Potentials of Current Motif Discovery Algorithms

10.4231/D33F4KN2K

Bin Li , Daisuke Kihara ORCID logo , Jianjun Hu

03/08/2013

Supplementary material for the papers: Limitations and Potentials of Current Motif Discovery Algorithms, Nucleic Acids Res. 2005; 33(15): 4899–4913

Algorithms Base Sequence Binding Sites Biochemistry Bioinformatics Computational Biology / Methods DNA/Chemistry DNA/methods Escherichia coli/Genetics Factors/Metabolism Markov Chains Markov Chains Regulatory Sequences Molecular Biosciences Regulon Sequence Alignment Sequence Analysis

Metabolic Source Isotopic Pair Labeling and Genome-Wide Association Are Complementary Tools for the Identification of Metabolite-Gene Associations in Plants

10.4231/1702-6M85

Brian Dilkes ORCID logo , Clint C S Chapple ORCID logo , Cole Wunderlich ORCID logo , Jeffrey Simpson ORCID logo , Xu Li

03/08/2021

Development of PODIUM: A tool to identify and extract from untargeted LC-MS data MS features that incorporated 13C-fed isotopic labels.

Biochemistry liquid chromatography–mass spectrometry (LC–MS) metabolomics Plant Metabolism stable isotope labeling untargeted metabolomics analyses

Predicted regulatory signals in the human HOXA locus: supplemental material for the report: Discovering sequences with potential regulatory characteristics

10.4231/D3DZ03214

Gregory E. Crawford , Minou Bina ORCID logo , Phillip J. Wyss , Sang P. Park , Sheryl A. Lazarus , Syed A. Shah , Wenhui Ren , Wojciech Szpankowski , Xiaohui C. Song

12/17/2013

Supplementary materials for the paper: Discovering sequences with potential regulatory characteristics. Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Genomics. 2009 Apr;93(4):314-22

Binding-site Biochemistry Bioinformatics Codes in Human DNA DNASE-I hypersensitive sites Gene Regulation Genetic Vocabulary Human Genome Hypersensitive Sites Molecular Biosciences Promoter Regions Regulatory Signals Sequence Context Transcription factor binding sites Transcription Factors

The Spliceosomal Protein SF3B5 is a Novel Component of Drosophila SAGA that Functions in Gene Expression Independent of Splicing - Supporting data for Stegeman et al. (2016)

10.4231/R74Q7S5J

Rachel Stegeman , Vikki Weake ORCID logo

11/03/2017

Supporting and raw data for Figures 1 - 5 from Stegeman R. et al. (2016). The Spliceosomal Protein SF3B5 is a Novel Component of Drosophila SAGA that Functions in Gene Expression Independent of Splicing. Journal of Molecular Biology. PMID: 27185460.

Biochemistry Drosophila Gene Expression SAGA Splicing Transcription

Cytochrome b5 protects photoreceptors from light stress-induced lipid peroxidation and retinal degeneration - Supporting data for Fig 4 from Chen et al. (2017)

10.4231/R7X34VNF

Donald Ready , Hana Hall , Jeffrey Simpson ORCID logo , Vikki Weake ORCID logo , Walter Leon-Salas , Xinping Chen ORCID logo

10/30/2017

Supporting confocal and electron microscopy images for Fig 4 from Chen et al. (2017). "Cytochrome b5 protects photoreceptors from light stress-induced lipid peroxidation and retinal degeneration"

Biochemistry Drosophila Lipid Peroxidation Phototoxicity Retinal Degeneration

Cytochrome b5 protects photoreceptors from light stress-induced lipid peroxidation and retinal degeneration - Supporting data for Fig 1 from Chen et al. (2017)

10.4231/R7JS9NMW

Donald Ready , Hana Hall , Jeffrey Simpson ORCID logo , Vikki Weake ORCID logo , Walter Leon-Salas , Xinping Chen ORCID logo

10/30/2017

Supporting microscopy images for Fig 1 from Chen et al. (2017). "Cytochrome b5 protects photoreceptors from light stress-induced lipid peroxidation and retinal degeneration"

Biochemistry Drosophila Lipid Peroxidation Phototoxicity Retinal Degeneration

Display #

Results 1 - 10 of 46