Datasets

Subject
Creator
Type
Date

subject: Chemistry type: dataset

Total is 33 Results
Localization of MLL1 morphemes in mouse mm9 genomic DNA

10.4231/R7KW5CXF

Daidong Wang , Minou Bina ORCID logo , Phillip J. Wyss , Xiaohui C. Song

04/01/2014

Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013)

Binding Sites Cell division Chemistry Chromatin structure Cis-elements Codes in DNA CpG islands Gene bookmarking Gene Regulation Mammalian genomes Mitosis MLL MLL binding sites Mouse genome Regulatory codes TREs Trithorax response elements

Density of ZFBS-Morph overlaps in the build hg19 of the human genome

10.4231/PR3C-J556

Minou Bina ORCID logo , Phillip J. Wyss , Xiaohui Carol Song

05/30/2019

Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.

Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Germline DMRs Human Genome ICRs MLL ZFP57

Localization of potential regulatory signals in the human genome

10.4231/R7V40S43

Minou Bina ORCID logo , Phillip J. Wyss

08/13/2014

Discovering sequences with potential regulatory characteristics

Bioinformatics Chemistry Codes in Human DNA Gene Regulation Genetic Vocabulary Genomics Human Genome Regulatory Signals Sequence Context Transcription factor binding sites

Mimicking the First Turn of an Alpha-Helix with an Unnatural Backbone: Conformation-Specific IR and UV Spectroscopy of Cyclically Constrained Beta/Gamma-Peptides (Dataset)

10.4231/R7B56GN2

Brian Fisher , Joseph R. Gord , Patrick S. Walsh , Samuel Gellman , Timothy S. Zwier ORCID logo

10/07/2014

Contained within are the text files for all experimental spectra presented in the paper as well as the Gaussian09 output files for assigned structures.

Chemistry Conformation Specific Spectroscopy Double Resonance Spectroscopy Foldamers Peptides Secondary Structure

Potential Transcription Factor Binding Sites in the Human Genome (hg19)

10.4231/R7JM27JN

Minou Bina ORCID logo , Phillip J. Wyss

10/08/2014

Supplementary material for the article entitled “Discovering sequences with potential regulatory characteristics”. Bina M., Wyss P., et al. Genomics 93:314-22 (2009).

Binding Sites Chemistry Gene Regulation Human Genome TFBSs Transcription Transcription factor binding sites Transcription Factors

Occurrences of MLL1 morphemes in human cDNAs retrieved from GenBank

10.4231/R71834DW

Minou Bina ORCID logo , Phillip J. Wyss

04/24/2015

Supplementary material for the publication entitled “Impact of the MLL1 Morphemes on Codon Utilization and Preservation in CpG Islands.” Bina, M, Wyss P. Biopolymers in press.

Biochemistry Bioinformatics Chemistry Coding sequences Codon bias Codon selection Codon utilization CpG islands Exon Exons Genomics Human Genome MLL1 morphemes in CDSs MLL1 morphemes in exons Morphemes MLL1 Overlapping codes Regulatory codes in DNA Trithorax response elements

Mixed 14/16 Helices in the Gas Phase: Conformation-Specific Spectroscopy of Z?(Gly)n, n = 1, 3, 5 (Dataset)

10.4231/R73F4MHR

Evan Buchanan , Jacob Dean , Timothy S. Zwier ORCID logo

12/19/2014

Mixed 14/16 Helices in the Gas Phase: Conformation-Specific Spectroscopy of Z?(Gly)n, n = 1, 3, 5 (Dataset)

Chemistry Conformation Specific Spectroscopy Double Resonance Spectroscopy Peptides Secondary Structure

Cyclic Constraints on Conformational Flexibility in γ-Peptides: Conformation Specific IR and UV Spectroscopy - Data Set

10.4231/R7TX3C94

Brian Fisher , Evan Buchanan , Patrick S. Walsh , Ryoji Kusaka , Samuel Gellman , Timothy S. Zwier ORCID logo , William H James III

01/07/2015

Contained within are .txt files for all experimentally recorded spectra, and the output files for the assigned structures.

Chemistry Conformation-Specific Foldamers Gas-Phase Infrared Mass Resolved Resonant Ion-dip infrared spectroscopy resonant two-photon ionization Spectroscopy Structure Determination Ultraviolet

Role of Ring-Constrained Gamma-Amino Acid Residues in Alpha/Gamma-Peptide Folding: Single-Conformation UV and IR Spectroscopy (Dataset)

10.4231/R7Q81B0F

Brian Fisher , Di Zhang , Joseph R. Gord , Patrick S. Walsh , Ryoji Kusaka , Samuel Gellman , Timothy S. Zwier ORCID logo

01/07/2015

Contained within are the text files for all experimental spectra presented in the paper as well as the Gaussian09 output files for assigned structures.

Chemistry Conformation Specific Spectroscopy Double Resonance Spectroscopy Foldamers Peptides Secondary Structure

Gas-Phase Folding of a Prototypical Protonated Pentapeptide: Spectroscopic Evidence for Formation of a Charge-stabilized Beta-Hairpin (Structures)

10.4231/R7XG9P3W

Andrew F. DeBlase , James G. Redwine , John R. Hopkins , Nicole Lyn Burke , Scott A. McLuckey , Timothy S. Zwier ORCID logo

02/17/2016

Contains .log files for structures accompanying the paper titled: "Gas-Phase Folding of a Prototypical Protonated Pentapeptide: Spectroscopic Evidence for Formation of a Charge-stabilized β-Hairpin"

Beta-Hairpin Beta-turn Chemistry Ion Spectroscopy Leucine enkephalin Mass Spectrometry Spectroscopy

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