PURR Registry

Position of MLL1 morphemes in human genomic DNA

10.4231/R7H41PBT

Daidong Wang , Elise Novorolsky , Minou Bina , Noorfatin J. Zulkefl , Phillip J. Wyss

03/04/2014

Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013).

Binding Sites Bioinformatics Cell division Chemistry Chromatin structure Cis-elements Codes in DNA CpG islands Gene bookmarking Gene Regulation Mammalian genomes Mitosis MLL MLL binding sites Mouse genome Regulatory codes TREs Trithorax response elements

Localization of MLL1 morphemes in mouse mm9 genomic DNA

10.4231/R7KW5CXF

Daidong Wang , Minou Bina , Phillip J. Wyss , Xiaohui C. Song

04/01/2014

Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013)

Binding Sites Cell division Chemistry Chromatin structure Cis-elements Codes in DNA CpG islands Gene bookmarking Gene Regulation Mammalian genomes Mitosis MLL MLL binding sites Mouse genome Regulatory codes TREs Trithorax response elements

Density of ZFBS-Morph overlaps in the build hg19 of the human genome

10.4231/PR3C-J556

Minou Bina , Phillip J. Wyss , Xiaohui Carol Song

05/30/2019

Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.

Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Germline DMRs Human Genome ICRs MLL ZFP57

Localization of potential regulatory signals in the human genome

10.4231/R7V40S43

Minou Bina , Phillip J. Wyss

08/13/2014

Discovering sequences with potential regulatory characteristics

Bioinformatics Chemistry Codes in Human DNA Gene Regulation Genetic Vocabulary Genomics Human Genome Regulatory Signals Sequence Context Transcription factor binding sites

Potential Transcription Factor Binding Sites in the Human Genome (hg19)

10.4231/R7JM27JN

Minou Bina , Phillip J. Wyss

10/08/2014

Supplementary material for the article entitled “Discovering sequences with potential regulatory characteristics”. Bina M., Wyss P., et al. Genomics 93:314-22 (2009).

Binding Sites Chemistry Gene Regulation Human Genome TFBSs Transcription Transcription factor binding sites Transcription Factors

Regulation of Phaeodactylum plastid gene transcription

10.4231/ME5R-C919

Gilbert Kayanja , Iskander Ibrahim , Sujith Puthiyaveetil

05/19/2021

This dataset contains raw data used for plotting the figures associated with the following publication https://link.springer.com/article/10.1007/s11120-020-00811-1

Biochemistry Gene Regulation light harvesting photosynthesis

An overview of peak positions –in plots of ZFBS-morph-overlap density– with respect to known ICRs/gDMRs in the mouse genome

10.4231/32C9-G644

Minou Bina

06/04/2020

Supplementary material for the publication entitled “Simultaneous discovery of candidate imprinted genes and Imprinting Control Regions in the mouse genome” Bina M., and Wyss P. bioRxiv doi: https://doi.org/10.1101/780551 (2019).

Chemistry DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions Mammalian genomes Mouse genome ZFP57

Positions of known ICRs/gDMRs with respect to peaks in plots of ZFBS-morph-overlap density in the mouse genome

10.4231/V87T-4X79

Minou Bina

06/04/2020

Supplementary material for the publication entitled “Simultaneous discovery of candidate imprinted genes and Imprinting Control Regions in the mouse genome” Bina M., and Wyss P. bioRxiv doi: https://doi.org/10.1101/780551 (2019).

Binding Sites Chemistry DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions Mammalian genomes MLL1 morphemes Mouse genome ZFP57