Subject
Creator
- Minou Bina, 0000-0001-6833-8698 15
- Phillip J. Wyss 8
- Phillip Wyss 4
- Xiaohui Carol Song 4
- Xiaohui Song 4
- Daidong Wang 2
- Elise Novorolsky 1
- Noorfatin J. Zulkefl 1
- Xiaohui C. Song 1
Type
- Dataset 15
Date
subject: Chemistry subject: Gene Regulation
Total is 15 Results
Potential Transcription Factor Binding Sites in the Human Genome (hg19)
10.4231/R7JM27JN
10/08/2014
Supplementary material for the article entitled “Discovering sequences with potential regulatory characteristics”. Bina M., Wyss P., et al. Genomics 93:314-22 (2009).
Binding Sites Chemistry Gene Regulation Human Genome TFBSs Transcription Transcription factor binding sites Transcription Factors
An overview of peak positions –in plots of ZFBS-morph-overlap density– with respect to known ICRs/gDMRs in the mouse genome
10.4231/32C9-G644
06/04/2020
Supplementary material for the publication entitled “Simultaneous discovery of candidate imprinted genes and Imprinting Control Regions in the mouse genome” Bina M., and Wyss P. bioRxiv doi: https://doi.org/10.1101/780551 (2019).
Chemistry DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions Mammalian genomes Mouse genome ZFP57
Positions of known ICRs/gDMRs with respect to peaks in plots of ZFBS-morph-overlap density in the mouse genome
10.4231/V87T-4X79
06/04/2020
Supplementary material for the publication entitled “Simultaneous discovery of candidate imprinted genes and Imprinting Control Regions in the mouse genome” Bina M., and Wyss P. bioRxiv doi: https://doi.org/10.1101/780551 (2019).
Binding Sites Chemistry DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions Mammalian genomes MLL1 morphemes Mouse genome ZFP57
The positions of ZFBS and ZFBS-Morph overlaps in the build canFam2 of the dog genome
10.4231/8VWJ-JP51
Minou Bina
,
Phillip J. Wyss
,
Xiaohui Carol Song
09/28/2020
Locating regulatory DNA elements in the dog genome.
Canines Chemistry Codes in dog DNA CpG-rich motifs DMRs Dog genomics Gene Regulation Genomic imprinting Germline DMRs ICRs KMT2A MLL1 Binding Sites MLL1 morphemes ZFP57
Density of ZFBS-Morph overlaps in the build canFam2 of the dog genome
10.4231/P6C1-5419
Minou Bina
,
Phillip Wyss
,
Xiaohui Song
06/16/2020
This publication provides a file (in wig.gz format) for examining the density of ZFBS-Morph overlaps at the UCSC genome browser.
Chemistry Codes in DNA DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions KMT2A MLL1 Binding Sites MLL1 morphemes ZFP57
Positions of predicted CTCF binding sites and unique A and B-repeats in the build hg19 of the Human Genome
10.4231/R74B2ZHD
01/25/2018
Supplementary materials for a publication entitled “Assessment of the CTCF Binding Sites and Repeat-Positions Upstream the Human H19 Gene“ Bina, M. January 2018, bioRxiv doi: 10.1101/250407
Binding Sites Chemistry Chromatin Boundaries Cohesin CTCF Gene Regulation Genomic imprinting Genomics H19 Human Genome IGF2 RAD21 SMC3
Density of ZFBS-Morph overlaps in the build mm9 of the mouse genome
10.4231/R7W37TJH
Minou Bina
,
Phillip J. Wyss
,
Xiaohui Carol Song
04/25/2018
Supplementary material for the publication entitled “Imprinted Control Regions include composite DNA elements consisting of the ZFP57 binding site overlapping MLL1 Morphemes” Bina M. Genomics, 109: 265–273 (2017).
Chemistry Codes in DNA DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions
Position of MLL1 morphemes in human genomic DNA
10.4231/R7H41PBT
Daidong Wang
,
Elise Novorolsky
,
Minou Bina
,
Noorfatin J. Zulkefl
,
Phillip J. Wyss
03/04/2014
Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013).
Binding Sites Bioinformatics Cell division Chemistry Chromatin structure Cis-elements Codes in DNA CpG islands Gene bookmarking Gene Regulation Mammalian genomes Mitosis MLL MLL binding sites Mouse genome Regulatory codes TREs Trithorax response elements
Localization of MLL1 morphemes in mouse mm9 genomic DNA
10.4231/R7KW5CXF
Daidong Wang
,
Minou Bina
,
Phillip J. Wyss
,
Xiaohui C. Song
04/01/2014
Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013)
Binding Sites Cell division Chemistry Chromatin structure Cis-elements Codes in DNA CpG islands Gene bookmarking Gene Regulation Mammalian genomes Mitosis MLL MLL binding sites Mouse genome Regulatory codes TREs Trithorax response elements
Density of ZFBS-Morph overlaps in the build hg19 of the human genome
10.4231/PR3C-J556
Minou Bina
,
Phillip J. Wyss
,
Xiaohui Carol Song
05/30/2019
Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.
Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Germline DMRs Human Genome ICRs MLL ZFP57
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