Subject
Creator
- Minou Bina, 0000-0001-6833-8698 16
- Phillip J. Wyss 9
- Phillip Wyss 4
- Xiaohui Carol Song 4
- Xiaohui Song 4
- Daidong Wang 2
- Xiaohui C. Song 2
- Elise Novorolsky 1
- Gilbert Kayanja 1
- Gregory E. Crawford 1
Type
- Dataset 17
Date
subject: Gene Regulation type: dataset
Total is 17 Results
Positions of known ICRs/gDMRs with respect to peaks in plots of ZFBS-morph-overlap density in the mouse genome
10.4231/V87T-4X79
Minou Bina, 0000-0001-6833-8698
06/04/2020
Supplementary material for the publication entitled “Simultaneous discovery of candidate imprinted genes and Imprinting Control Regions in the mouse genome” Bina M., and Wyss P. bioRxiv doi: https://doi.org/10.1101/780551 (2019).
Binding Sites Chemistry DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions Mammalian genomes MLL1 morphemes Mouse genome ZFP57
The positions of ZFBS and ZFBS-Morph overlaps in the build canFam2 of the dog genome
10.4231/8VWJ-JP51
Minou Bina, 0000-0001-6833-8698, Phillip J. Wyss, Xiaohui Carol Song
09/28/2020
Locating regulatory DNA elements in the dog genome.
Canines Chemistry Codes in dog DNA CpG-rich motifs DMRs Dog genomics Gene Regulation Genomic imprinting Germline DMRs ICRs KMT2A MLL1 Binding Sites MLL1 morphemes ZFP57
Density of ZFBS-Morph overlaps in the build canFam2 of the dog genome
10.4231/P6C1-5419
Minou Bina, 0000-0001-6833-8698, Phillip Wyss, Xiaohui Song
06/16/2020
This publication provides a file (in wig.gz format) for examining the density of ZFBS-Morph overlaps at the UCSC genome browser.
Chemistry Codes in DNA DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions KMT2A MLL1 Binding Sites MLL1 morphemes ZFP57
The positions of ZFBS and ZFBS-Morph overlaps in the build bosTau8 of the Bos taurus genome
10.4231/K1SE-T951
Minou Bina, 0000-0001-6833-8698, Phillip Wyss, Xiaohui Song
12/20/2019
This project provides data for locating the positions of the ZFBS and ZFBS-morph overlaps in the build bosTau8 of the cow genome.
Chemistry Codes in DNA CpG-rich motifs DMRs Gene Regulation Genomic imprinting Germline DMRs ICR Imprinting Control Regions KMT2A MLL MLL1 MLL1 Binding Sites MLL1 morphemes ZFP57
Density of ZFBS-Morph overlaps in the build bosTau8 of the Bos taurus genome
10.4231/HWBM-2M96
Minou Bina, 0000-0001-6833-8698, Phillip Wyss, Xiaohui Song
01/02/2020
This publication provides a file (in wig.gz format) for displaying the density of ZFBS-Morph overlaps in the build bosTau8 of the cow genome.
Chemistry Codes in DNA DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions KMT2A MLL1 Binding Sites MLL1 morphemes ZFP57
Regulation of Phaeodactylum plastid gene transcription
10.4231/ME5R-C919
Gilbert Kayanja, Iskander Ibrahim, Sujith Puthiyaveetil, 0000-0001-7505-4511
05/19/2021
This dataset contains raw data used for plotting the figures associated with the following publication https://link.springer.com/article/10.1007/s11120-020-00811-1
Biochemistry Gene Regulation light harvesting photosynthesis
Density of ZFBS-Morph overlaps in the build mm9 of the mouse genome
10.4231/R7W37TJH
Minou Bina, 0000-0001-6833-8698, Phillip J. Wyss, Xiaohui Carol Song
04/25/2018
Supplementary material for the publication entitled “Imprinted Control Regions include composite DNA elements consisting of the ZFP57 binding site overlapping MLL1 Morphemes” Bina M. Genomics, 109: 265–273 (2017).
Chemistry Codes in DNA DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions
The positions of ZFBS and ZFBS-Morph overlaps in the build hg19 of the human genome
10.4231/SK8Y-EA21
Minou Bina, 0000-0001-6833-8698, Phillip J. Wyss, Xiaohui Carol Song
05/30/2019
Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.
Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Human Genome MLL ZFP57
Positions of predicted CTCF binding sites and unique A and B-repeats in the build hg19 of the Human Genome
10.4231/R74B2ZHD
Minou Bina, 0000-0001-6833-8698
01/25/2018
Supplementary materials for a publication entitled “Assessment of the CTCF Binding Sites and Repeat-Positions Upstream the Human H19 Gene“ Bina, M. January 2018, bioRxiv doi: 10.1101/250407
Binding Sites Chemistry Chromatin Boundaries Cohesin CTCF Gene Regulation Genomic imprinting Genomics H19 Human Genome IGF2 RAD21 SMC3
Predicted regulatory signals in the human HOXA locus: supplemental material for the report: Discovering sequences with potential regulatory characteristics
10.4231/D3DZ03214
Gregory E. Crawford, Minou Bina, 0000-0001-6833-8698, Phillip J. Wyss, Sang P. Park, Sheryl A. Lazarus, Syed A. Shah, Wenhui Ren, Wojciech Szpankowski, Xiaohui C. Song
12/17/2013
Supplementary materials for the paper: Discovering sequences with potential regulatory characteristics. Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Genomics. 2009 Apr;93(4):314-22
Binding-site Biochemistry Bioinformatics Codes in Human DNA DNASE-I hypersensitive sites Gene Regulation Genetic Vocabulary Human Genome Hypersensitive Sites Molecular Biosciences Promoter Regions Regulatory Signals Sequence Context Transcription factor binding sites Transcription Factors
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