PURR Registry

Density of ZFBS-Morph overlaps in the build hg19 of the human genome

10.4231/PR3C-J556

Minou Bina , Phillip J. Wyss , Xiaohui Carol Song

05/30/2019

Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.

Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Germline DMRs Human Genome ICRs MLL ZFP57

Localization of potential regulatory signals in the human genome

10.4231/R7V40S43

Minou Bina , Phillip J. Wyss

08/13/2014

Discovering sequences with potential regulatory characteristics

Bioinformatics Chemistry Codes in Human DNA Gene Regulation Genetic Vocabulary Genomics Human Genome Regulatory Signals Sequence Context Transcription factor binding sites

Occurrences of MLL1 morphemes in human cDNAs retrieved from GenBank

10.4231/R71834DW

Minou Bina , Phillip J. Wyss

04/24/2015

Supplementary material for the publication entitled “Impact of the MLL1 Morphemes on Codon Utilization and Preservation in CpG Islands.” Bina, M, Wyss P. Biopolymers in press.

Biochemistry Bioinformatics Chemistry Coding sequences Codon bias Codon selection Codon utilization CpG islands Exon Exons Genomics Human Genome MLL1 morphemes in CDSs MLL1 morphemes in exons Morphemes MLL1 Overlapping codes Regulatory codes in DNA Trithorax response elements

SNP datasets and passport information of sorghum accessions from Ethiopia

10.4231/EZDX-XT41

Adane Gebreyohannes , Alemnesh Bekele , Alemu Tirfessa , Amare Nega , Amare Seyoum , Chemeda Birhanu , Dagnachew Lule , Gebisa Ejeta , Getachew Ayana , Gezahegn Tessema , Habte Nida , Kebede Dessalegn , Moges Mekonen , Tamirat Bejiga , Tesfaye Mengiste , Tesfaye Tesso

08/03/2020

Agro-climatic information, phenotypic and SNP datasets were generated for 1628 Ethiopian sorghum accessions and utilized for a study on germplasm characterization and genome-environment association studies.

Botany Ethiopia Genomics Germplasm Landrace Phenotyping Plant Pathology Sorghum

Rice imputation files: reference panel and recombination map

10.4231/1CKS-S381

Diane Ran Wang , Dmytro Chebotarov , Francisco Agosto-Perez , Jonathan Marchini , Kenneth McNally , Melissa Fitzgerald , Nickolai Alexandrov , Susan McCouch , Yuxin Shi

08/19/2021

Files required for imputation of rice genomes using IMPUTE-2 software.

Agronomy Genetic Diversity Genomics imputation reference panel Rice

Mutations in sorghum SBEIIb and SSIIa affect alkali spreading value, starch composition, thermal properties and flour viscosity

10.4231/3GBF-RS75

Adedayo Adeyanju , Bhavesh Patel , Bruce A. Craig , Charles Addo-Quaye , Clifford Weil , Mitchell Tuinstra , Osvaldo H. Campanella , Richard Westerman , Stefanie Griebel , Suzanne M. Cunningham

07/24/2019

Seven novel alleles of SBEIIb and one allele of SSIIa co-segregated with the ASV phenotype and contributed to distinct starch quality traits important for food processing applications.

Agronomy Alkali Spreading Value Amylose Genomics Paste Viscosity Profiles SBEIIb Sorghum SSIIa Starch Gelatinization Variant Call Format (VCF)

Ethiopian sorghum landrace SNP and phenotype data

10.4231/PYQV-AT79

Adane Gebreyohannes , Adedayo Adeyanju , Alemnesh Bekele , Alemu Tirfessa , Amare Nega , Amare Seyoum , Dagnachew Lule , Firew Mekbib , Gebisa Ejeta , Getachew Ayana , Gezahegn Tessema , Habte Nida , Kebede Desalegn , Ketema Belete , Moges Mekonen , Taye Taddese , Tesfaye Mengiste , Tesfaye Tesso

05/03/2019

Phenotypic and SNP datasets generated for a study on Ethiopian sorghum genomics and gene mining for important traits.

Botany Ethiopia Genomics Germplasm Landrace Phenotyping Plant Pathology SNP Sorghum

The positions of ZFBS and ZFBS-Morph overlaps in the build hg19 of the human genome

10.4231/SK8Y-EA21

Minou Bina , Phillip J. Wyss , Xiaohui Carol Song

05/30/2019

Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.

Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Human Genome MLL ZFP57

Positions of predicted CTCF binding sites and unique A and B-repeats in the build hg19 of the Human Genome

10.4231/R74B2ZHD

Minou Bina

01/25/2018

Supplementary materials for a publication entitled “Assessment of the CTCF Binding Sites and Repeat-Positions Upstream the Human H19 Gene“ Bina, M. January 2018, bioRxiv doi: 10.1101/250407

Binding Sites Chemistry Chromatin Boundaries Cohesin CTCF Gene Regulation Genomic imprinting Genomics H19 Human Genome IGF2 RAD21 SMC3

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Total is 9 Results