subject: Biochemistry type: dataset
10.4231/R71834DW
04/24/2015
Supplementary material for the publication entitled “Impact of the MLL1 Morphemes on Codon Utilization and Preservation in CpG Islands.” Bina, M, Wyss P. Biopolymers in press.
Biochemistry Bioinformatics Chemistry Coding sequences Codon bias Codon selection Codon utilization CpG islands Exon Exons Genomics Human Genome MLL1 morphemes in CDSs MLL1 morphemes in exons Morphemes MLL1 Overlapping codes Regulatory codes in DNA Trithorax response elements
10.4231/R77H1GJB
Clint C S Chapple , Huaping Mo , Jeong Kim , Shinyoung Lee
02/02/2017
BBIO-D-16-00198R1 Genetic engineering of Arabidopsis to overproduce disinapoyl esters, potential lignin modification molecules Shinyoung Lee; Huaping Mo; Jeong Im Kim; Clint Chapple. Biotechnology for Biofuels
10.4231/R7PG1PQR
Jingqun Ma , Pete E Pascuzzi , Vikki Marie Weake
02/20/2017
Supporting and raw data for Figures 1 - 5 and Figure S1 from: Ma et al. (2016) Transcriptome Profiling Identifies Multiplexin as a target of SAGA Deubiquitinase Activity in Glia.... G3 (Bethesda). PMID: 27261002.
axon guidance Biochemistry Drosophila glia Neuroscience nonstop RNA_seq SAGA sgf11 Transcriptome
10.4231/D3T727G0X
Catherine Rayon , Daisuke Kihara , Ishita K. Khan , Meghana Chitale
02/14/2013
Supplemental datasets used for evaluation of function predictions for moonlighting proteins.
Biochemistry Bioinformatics Molecular Biosciences proteomics
10.4231/D3Z02Z836
Daisuke Kihara , Meghana Chitale , Troy Hawkins
02/14/2013
Supplementary Material for the Paper: Functional similarity network with high confidence protein function prediction by PFP. BMC Bioinformatics. 2010 May 19;11:265. doi: 10.1186/1471-2105-11-265.
Biochemistry Bioinformatics Computational Biology / Methods Genetic Molecular Biosciences Proteins / Metabolism
10.4231/D3PK0719W
02/14/2013
Supplementary Material for the Paper: Threading Without Optimizing Weighting Factor for the Scoring Function Proteins, in revision (2008). Proteins. 2008 Nov 15;73(3):581-96. doi: 10.1002/prot.22082.
Algorithms Biochemistry Bioinformatics databases Molecular Biosciences Protein Proteins / chemistry
10.4231/D3DR2P83H
Daisuke Kihara , H. Huang , Y.H. Tan
03/08/2013
Supplementary materials for the paper: Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences. Proteins: Structure, Function and Bioinformatics 64: 587-600. (2006)
Amino Acids/chemistry Biochemistry Bioinformatics Molecular Biosciences Protein Folding
10.4231/D37659F6Q
03/08/2013
Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.
Bacterial Bacterial/Genetics Biochemistry Bioinformatics Deinococcus/Genetics Escherichiacoli/Metabolism Molecular Biosciences Multigene Family RNA
10.4231/D3BZ61792
Bin Li , Daisuke Kihara , Manish Agrawal , Srinivasan Turuvekere
03/08/2013
Supplementary material for the paper: Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria. Proteins. 2008 May 1;71(2):670-83.
Argininosuccinate Synthase Binding Sites Biochemistry Bioinformatics Computer Simulation Molecular Biosciences Protein Structure Sensitivity and Specificity Tertiary Tetrahydrofolate Dehydrogenase/chemistry
10.4231/D33F4KN2K
Bin Li , Daisuke Kihara , Jianjun Hu
03/08/2013
Supplementary material for the papers: Limitations and Potentials of Current Motif Discovery Algorithms, Nucleic Acids Res. 2005; 33(15): 4899–4913
Algorithms Base Sequence Binding Sites Biochemistry Bioinformatics Computational Biology / Methods DNA/Chemistry DNA/methods Escherichia coli/Genetics Factors/Metabolism Markov Chains Markov Chains Regulatory Sequences Molecular Biosciences Regulon Sequence Alignment Sequence Analysis
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