Datasets

Subject
Creator
Type
Date

subject: Gene Regulation type: dataset

Total is 17 Results
Positions of ZFBS and ZFBS-Morph overlaps in the build mm9 of the mouse genome

10.4231/R7C82782

Minou Bina ORCID logo , Phillip Wyss , Xiaohui Song

04/24/2017

Supplementary materials for the publication entitled “Imprinted Control Regions Include Composite DNA Elements consisting of the ZFP57 Binding Site overlapping MLL1 Morphemes” Bina M. Genomics, in press

Chemistry Codes in DNA CpG-rich motifs DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions KMT2A MLL binding sites MLL1 morphemes ZFP57

Regulation of Phaeodactylum plastid gene transcription

10.4231/ME5R-C919

Gilbert Kayanja , Iskander Ibrahim , Sujith Puthiyaveetil ORCID logo

05/19/2021

This dataset contains raw data used for plotting the figures associated with the following publication https://link.springer.com/article/10.1007/s11120-020-00811-1

Biochemistry Gene Regulation light harvesting photosynthesis

Predicted regulatory signals in the human HOXA locus: supplemental material for the report: Discovering sequences with potential regulatory characteristics

10.4231/D3DZ03214

Gregory E. Crawford , Minou Bina ORCID logo , Phillip J. Wyss , Sang P. Park , Sheryl A. Lazarus , Syed A. Shah , Wenhui Ren , Wojciech Szpankowski , Xiaohui C. Song

12/17/2013

Supplementary materials for the paper: Discovering sequences with potential regulatory characteristics. Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Genomics. 2009 Apr;93(4):314-22

Binding-site Biochemistry Bioinformatics Codes in Human DNA DNASE-I hypersensitive sites Gene Regulation Genetic Vocabulary Human Genome Hypersensitive Sites Molecular Biosciences Promoter Regions Regulatory Signals Sequence Context Transcription factor binding sites Transcription Factors

Position of MLL1 morphemes in human genomic DNA

10.4231/R7H41PBT

Daidong Wang , Elise Novorolsky , Minou Bina ORCID logo , Noorfatin J. Zulkefl , Phillip J. Wyss

03/04/2014

Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013).

Binding Sites Bioinformatics Cell division Chemistry Chromatin structure Cis-elements Codes in DNA CpG islands Gene bookmarking Gene Regulation Mammalian genomes Mitosis MLL MLL binding sites Mouse genome Regulatory codes TREs Trithorax response elements

Localization of MLL1 morphemes in mouse mm9 genomic DNA

10.4231/R7KW5CXF

Daidong Wang , Minou Bina ORCID logo , Phillip J. Wyss , Xiaohui C. Song

04/01/2014

Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013)

Binding Sites Cell division Chemistry Chromatin structure Cis-elements Codes in DNA CpG islands Gene bookmarking Gene Regulation Mammalian genomes Mitosis MLL MLL binding sites Mouse genome Regulatory codes TREs Trithorax response elements

Density of ZFBS-Morph overlaps in the build hg19 of the human genome

10.4231/PR3C-J556

Minou Bina ORCID logo , Phillip J. Wyss , Xiaohui Carol Song

05/30/2019

Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.

Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Germline DMRs Human Genome ICRs MLL ZFP57

Localization of potential regulatory signals in the human genome

10.4231/R7V40S43

Minou Bina ORCID logo , Phillip J. Wyss

08/13/2014

Discovering sequences with potential regulatory characteristics

Bioinformatics Chemistry Codes in Human DNA Gene Regulation Genetic Vocabulary Genomics Human Genome Regulatory Signals Sequence Context Transcription factor binding sites

Potential Transcription Factor Binding Sites in the Human Genome (hg19)

10.4231/R7JM27JN

Minou Bina ORCID logo , Phillip J. Wyss

10/08/2014

Supplementary material for the article entitled “Discovering sequences with potential regulatory characteristics”. Bina M., Wyss P., et al. Genomics 93:314-22 (2009).

Binding Sites Chemistry Gene Regulation Human Genome TFBSs Transcription Transcription factor binding sites Transcription Factors

Density of ZFBS-Morph overlaps in the build mm9 of the mouse genome

10.4231/R7W37TJH

Minou Bina ORCID logo , Phillip J. Wyss , Xiaohui Carol Song

04/25/2018

Supplementary material for the publication entitled “Imprinted Control Regions include composite DNA elements consisting of the ZFP57 binding site overlapping MLL1 Morphemes” Bina M.  Genomics, 109: 265–273 (2017).

Chemistry Codes in DNA DMRs Gene Regulation Genomic imprinting Germline DMRs ICRs Imprinting Control Regions

The positions of ZFBS and ZFBS-Morph overlaps in the build hg19 of the human genome

10.4231/SK8Y-EA21

Minou Bina ORCID logo , Phillip J. Wyss , Xiaohui Carol Song

05/30/2019

Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.

Chemistry Codes in Human DNA Gene Regulation Genomic imprinting Genomics Human Genome MLL ZFP57

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