Subject
Creator
- Daisuke Kihara, 0000-0003-4091-6614 7
- Minou Bina, 0000-0001-6833-8698 4
- Phillip J. Wyss 4
- Zhongming Liu, 0000-0002-8773-4204 3
- Bin Li 2
- Meghana Chitale 2
- Rodrigo Castellanos 2
- Catherine Rayon 1
- Daidong Wang 1
- David Yifeng 1
Type
- Dataset 14
Date
Total is 14 Results
Localization of potential regulatory signals in the human genome
10.4231/R7V40S43
08/13/2014
Discovering sequences with potential regulatory characteristics
Bioinformatics Chemistry Codes in Human DNA Gene Regulation Genetic Vocabulary Genomics Human Genome Regulatory Signals Sequence Context Transcription factor binding sites
Occurrences of MLL1 morphemes in human cDNAs retrieved from GenBank
10.4231/R71834DW
04/24/2015
Supplementary material for the publication entitled “Impact of the MLL1 Morphemes on Codon Utilization and Preservation in CpG Islands.” Bina, M, Wyss P. Biopolymers in press.
Biochemistry Bioinformatics Chemistry Coding sequences Codon bias Codon selection Codon utilization CpG islands Exon Exons Genomics Human Genome MLL1 morphemes in CDSs MLL1 morphemes in exons Morphemes MLL1 Overlapping codes Regulatory codes in DNA Trithorax response elements
Evaluation of Function Predictions for Moonlighting Proteins
10.4231/D3T727G0X
Catherine Rayon
,
Daisuke Kihara
,
Ishita K. Khan
,
Meghana Chitale
02/14/2013
Supplemental datasets used for evaluation of function predictions for moonlighting proteins.
Biochemistry Bioinformatics Molecular Biosciences proteomics
Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP
10.4231/D3Z02Z836
Daisuke Kihara
,
Meghana Chitale
,
Troy Hawkins
02/14/2013
Supplementary Material for the Paper: Functional similarity network with high confidence protein function prediction by PFP. BMC Bioinformatics. 2010 May 19;11:265. doi: 10.1186/1471-2105-11-265.
Biochemistry Bioinformatics Computational Biology / Methods Genetic Molecular Biosciences Proteins / Metabolism
Threading Without Optimizing Weighting Factor for the Scoring Function Proteins
10.4231/D3PK0719W
02/14/2013
Supplementary Material for the Paper: Threading Without Optimizing Weighting Factor for the Scoring Function Proteins, in revision (2008). Proteins. 2008 Nov 15;73(3):581-96. doi: 10.1002/prot.22082.
Algorithms Biochemistry Bioinformatics databases Molecular Biosciences Protein Proteins / chemistry
Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences
10.4231/D3DR2P83H
Daisuke Kihara
,
H. Huang
,
Y.H. Tan
03/08/2013
Supplementary materials for the paper: Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences. Proteins: Structure, Function and Bioinformatics 64: 587-600. (2006)
Amino Acids/chemistry Biochemistry Bioinformatics Molecular Biosciences Protein Folding
Comparative genomics of small RNAs in bacterial genomes
10.4231/D37659F6Q
03/08/2013
Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.
Bacterial Bacterial/Genetics Biochemistry Bioinformatics Deinococcus/Genetics Escherichiacoli/Metabolism Molecular Biosciences Multigene Family RNA
Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria
10.4231/D3BZ61792
Bin Li
,
Daisuke Kihara
,
Manish Agrawal
,
Srinivasan Turuvekere
03/08/2013
Supplementary material for the paper: Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria. Proteins. 2008 May 1;71(2):670-83.
Argininosuccinate Synthase Binding Sites Biochemistry Bioinformatics Computer Simulation Molecular Biosciences Protein Structure Sensitivity and Specificity Tertiary Tetrahydrofolate Dehydrogenase/chemistry
Limitations and Potentials of Current Motif Discovery Algorithms
10.4231/D33F4KN2K
Bin Li
,
Daisuke Kihara
,
Jianjun Hu
03/08/2013
Supplementary material for the papers: Limitations and Potentials of Current Motif Discovery Algorithms, Nucleic Acids Res. 2005; 33(15): 4899–4913
Algorithms Base Sequence Binding Sites Biochemistry Bioinformatics Computational Biology / Methods DNA/Chemistry DNA/methods Escherichia coli/Genetics Factors/Metabolism Markov Chains Markov Chains Regulatory Sequences Molecular Biosciences Regulon Sequence Alignment Sequence Analysis
Signal Processing Toolbox for Simultaneously Acquired fMRI and EEG
10.4231/R7QF8QT4
Rodrigo Castellanos
,
Zhongming Liu
07/27/2015
This Matlab toolbox includes signal processing functions to remove gradient and pulse artifacts in EEG data recorded simultaneously with fMRI. It is distributed as a GUI plugin for EEGLAB.
Bioinformatics Biomedical Engineering Electrical and Computer Engineering fMRI-EEG independent component analysis Signal Processing Singular value decomposition
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