Datasets

subject: Neuroscience type: dataset

Total is 20 Results
Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

10.4231/STQE-9A91

Estuardo Robles, 0000-0002-1202-2050

12/16/2021

In this study we demonstrate that torus longitudinalis feedback projections to tectum drive binocular integration and spatial summation in a defined tectal circuit. These findings reveal a novel role for the zebrafish torus longitudinalis.

biological sciences fluorescence microscopy Matlab Neuroscience research Vision zebrafish

A genetic labeling system to study dendritic spine development in zebrafish

10.4231/0BQQ-DV64

Elisabeth C DeMarco, Estuardo Robles, 0000-0002-1202-2050, George R Stoner

08/15/2022

We have developed a genetic labeling system in zebrafish to enable high resolution in vivo imaging of dendritic spine dynamics during larval development.

biological sciences fluorescence microscopy Neuroscience Research Data Depot

A Multi-state Model of the CaMKII Holoenzyme using MCell 3.3

10.4231/MBPK-D277

Matthew C Pharris, Tamara L Kinzer-Ursem, 0000-0001-7343-115X

03/11/2019

This model uses a specialized rule-based syntax in MCell 3.3 to model the twelve-subunit CaMKII holoenzyme without inducing combinatorial explosion. The model allows us to explore the regulation of CaMKII activation and autophosphorylation.

Biomedical Engineering Calmodulin Computational Modeling Neuroscience Protein Signaling

A Multi-state Model of the CaMKII Holoenzyme using MCell 3.3

10.4231/MV0Z-8Z57

Matthew C Pharris, Tamara L Kinzer-Ursem, 0000-0001-7343-115X

07/29/2019

This model uses a specialized rule-based syntax in MCell 3.3 to model the twelve-subunit CaMKII holoenzyme without inducing combinatorial explosion. The model allows us to explore the regulation of CaMKII activation and autophosphorylation.

Biomedical Engineering Calcium Calmodulin Computational Modeling Kinase Neuroscience Protein Signaling Rule-Based Modeling Synaptic Plasticity

Competitive Tuning of Ca2+/Calmodulin-Activated Proteins Provides a Compensatory Mechanism for AMPA Receptor Phosphorylation in Synaptic Plasticity

10.4231/R7VX0DS0

Matthew C Pharris, Tamara L. Kinzer-Ursem, 0000-0001-7343-115X

07/30/2018

Code for the basic 4-state competitive binding model that builds on previous work by incorporating an additional competitor for calmodulin along with a number of downstream proteins. Also include is sample code for global sensitivity analysis...

Biomedical Engineering Calmodulin Neuroscience

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